Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2728 |
Symbol | |
ID | 3970281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2962405 |
End bp | 2963304 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637925838 |
Product | Beta-lactamase |
Protein accession | YP_532595 |
Protein GI | 90424225 |
COG category | [V] Defense mechanisms |
COG ID | [COG2367] Beta-lactamase class A |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0079236 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0883749 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACACAC GACGCCACTT CACCGAACGC TCTTTGGCAA CAGTGCTGGG GGCCTGTCTG GCGTTGCGGC CGGGATCGTC TGTCGCGTCC GATGGCGCAG ATGGTTTCGC GGCGTTGGCG GCGAGCTTTG CCAAGATCGA AGCAACAAGC GGCGGCCGAC TTGGCGTTGC GGTTCTCGAT ACCAAATCTG CCGCCCTCGT CGGCTATCGG CTCGATGAGC GTTTCCCGAT GTGCAGCACG TTCAAGCTCA TCGCTGCAGC GGCCATATTG GCCAGAGTCG ACGCCGGAAC TGAACGGCTC GATCGACGCC TACGCATCGC CCCCGAGGAT ATCCTTTCGT ACGCGCCGAC AACGAAACAG CATGTCGGAA AAGACCTGTC GGTTGCCGAA CTCTGCGAAG CGGCGATCGT GCTCAGCGAC AACACGGCAG CCAATCTGCT GCTGACCAGG CTCGGTGGCC CCGCCGCCTT GACCCGATAC GCCCGCTCCC TCGGTGACGA GGCGACACGC CTCGATCGCA TGGAGCCGGA TCTCAACGAA GCCACGCCGG GCGATCCCCG CGATACGACG ACACCCGCCG CGATGGCCCG CGCCGTCCAG GCGGTTGCCG TCGGGACCGC GCTCTCGCCA GGCTCGCGGG ATCGTCTGAT CACCTGGCTA ATCGACTGCA AGACCGGCGG CGCCAGGTTG CGAGCCGGAC TGCCGTCGTC TTGGCGCGTT GGCGACAAGA CCGGAAGCGG CAGCCACGGG TCGAGCAACG ACGTGGCGGT GATCTGGCCG CAAGATCGGG CGCCTCTGAT CATTGCCGCC TATCTTACCG AAACGGCCGG CTCCGACGAC CAGCGCAACG CCACCCATGC TTCCGTTGCC CGCTCCATCG CGGCAAGCCT GACGCGATAA
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Protein sequence | MYTRRHFTER SLATVLGACL ALRPGSSVAS DGADGFAALA ASFAKIEATS GGRLGVAVLD TKSAALVGYR LDERFPMCST FKLIAAAAIL ARVDAGTERL DRRLRIAPED ILSYAPTTKQ HVGKDLSVAE LCEAAIVLSD NTAANLLLTR LGGPAALTRY ARSLGDEATR LDRMEPDLNE ATPGDPRDTT TPAAMARAVQ AVAVGTALSP GSRDRLITWL IDCKTGGARL RAGLPSSWRV GDKTGSGSHG SSNDVAVIWP QDRAPLIIAA YLTETAGSDD QRNATHASVA RSIAASLTR
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