Gene RPC_2728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2728 
Symbol 
ID3970281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2962405 
End bp2963304 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content65% 
IMG OID637925838 
ProductBeta-lactamase 
Protein accessionYP_532595 
Protein GI90424225 
COG category[V] Defense mechanisms 
COG ID[COG2367] Beta-lactamase class A 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0079236 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0883749 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACACAC GACGCCACTT CACCGAACGC TCTTTGGCAA CAGTGCTGGG GGCCTGTCTG 
GCGTTGCGGC CGGGATCGTC TGTCGCGTCC GATGGCGCAG ATGGTTTCGC GGCGTTGGCG
GCGAGCTTTG CCAAGATCGA AGCAACAAGC GGCGGCCGAC TTGGCGTTGC GGTTCTCGAT
ACCAAATCTG CCGCCCTCGT CGGCTATCGG CTCGATGAGC GTTTCCCGAT GTGCAGCACG
TTCAAGCTCA TCGCTGCAGC GGCCATATTG GCCAGAGTCG ACGCCGGAAC TGAACGGCTC
GATCGACGCC TACGCATCGC CCCCGAGGAT ATCCTTTCGT ACGCGCCGAC AACGAAACAG
CATGTCGGAA AAGACCTGTC GGTTGCCGAA CTCTGCGAAG CGGCGATCGT GCTCAGCGAC
AACACGGCAG CCAATCTGCT GCTGACCAGG CTCGGTGGCC CCGCCGCCTT GACCCGATAC
GCCCGCTCCC TCGGTGACGA GGCGACACGC CTCGATCGCA TGGAGCCGGA TCTCAACGAA
GCCACGCCGG GCGATCCCCG CGATACGACG ACACCCGCCG CGATGGCCCG CGCCGTCCAG
GCGGTTGCCG TCGGGACCGC GCTCTCGCCA GGCTCGCGGG ATCGTCTGAT CACCTGGCTA
ATCGACTGCA AGACCGGCGG CGCCAGGTTG CGAGCCGGAC TGCCGTCGTC TTGGCGCGTT
GGCGACAAGA CCGGAAGCGG CAGCCACGGG TCGAGCAACG ACGTGGCGGT GATCTGGCCG
CAAGATCGGG CGCCTCTGAT CATTGCCGCC TATCTTACCG AAACGGCCGG CTCCGACGAC
CAGCGCAACG CCACCCATGC TTCCGTTGCC CGCTCCATCG CGGCAAGCCT GACGCGATAA
 
Protein sequence
MYTRRHFTER SLATVLGACL ALRPGSSVAS DGADGFAALA ASFAKIEATS GGRLGVAVLD 
TKSAALVGYR LDERFPMCST FKLIAAAAIL ARVDAGTERL DRRLRIAPED ILSYAPTTKQ
HVGKDLSVAE LCEAAIVLSD NTAANLLLTR LGGPAALTRY ARSLGDEATR LDRMEPDLNE
ATPGDPRDTT TPAAMARAVQ AVAVGTALSP GSRDRLITWL IDCKTGGARL RAGLPSSWRV
GDKTGSGSHG SSNDVAVIWP QDRAPLIIAA YLTETAGSDD QRNATHASVA RSIAASLTR