Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2610 |
Symbol | |
ID | 3973289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2840122 |
End bp | 2843640 |
Gene Length | 3519 bp |
Protein Length | 1172 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637925721 |
Product | transcription-repair coupling factor |
Protein accession | YP_532479 |
Protein GI | 90424109 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.776583 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAC CGACCCGCTC GCCCGCGGAG CTGCTCGCCC CCGGACAGGC TCTGACCTTC GCCAACGTCG CCGAGAGCGC CGAAGGGCTG ATCGTGTCGG ATCTGGCGCG CGCGGTCGCG GCGCGGCCGA AGCCGCCGGC GGTGTCGCTC GCGGTGATCT GCCGCGACGG CCCGCGGATG CAGCAGCTGG CGCGCTCGCT GGAATTCTTC GCGCCGGATC TTGCGGTGAT GCAATTCCCG GCCTGGGATT GTCAGCCCTA TGACCGGGTA TCGCCGCACG GCGGCGTGCT GGCGCAGCGG CTGACCACGC TGGCGCGGCT GTCGCGGCTG AAGGGCAGCG ACAAGCCGCT GATCGTGTTG ACCACGGTCA ACGCCATCGT GCAGCGGGTG CCGGCGCGCG AAGTGATCGC CGCGCAGGCG CTGTCGGTGG CGCCCGGCCA CGCGGTGTCG ATGGAGTCGA TCGTCGCCTG GCTCGAGCAC AACGGCTACA ACCGTTCCTC GACGGTGCGC GAGCCCGGCG AATACGCGGT GCGCGGCGGC ATCCTCGATC TGTTTCCGGC CGGCCTCGAC CAGCCGGTGC GATTCGACTT CTTCGGCGAC ACGCTGGAAT CGATCCGCAC CTTCGACGCC GAGACCCAGC GCACGCTGCT CGACATGCGC GCGCTCGATC TGGTGCCGAT CTCGGAATTC CAACTGGTCA CCGACACCAT CCGCAAATTC CGCATGGGCT ATGTCGCCGA ATTCGGCGCG CCGCTGCGCG ACGATCAGCT CTACGAAGCG GTCAGCGAAG GCCGCCGCTA TCCCGGCATG GAGCACTGGC TGCCCTTGTT CCAGGAGCGG ATGGACACGT TGTTCGACTA TCTCGACCGC ACGCCGATCG CGATCGAACC GCAGGGCGAG GATGCCGCGC GCGAACGCTT CAAGCAGATC GGCGACTACT ATCTGGCGCG GCGCGAGGCG CGGGACATCC CCGGCGGCGG CGCGATCTAC AATCCGTTGC CGCCTGACCG GCTGTATCTG GCCGAACCCG AATGGGAGAA GTGCCTGCAA GGCGTGGCGC TGGCGCGGCT GACGCCGTTC GCGGTGCCGG CCGACGACGG CCACGTCATC GATGCCGCAG CAAGGGCCGG CCGCAACTTC GCGCCGGAGC GCGCCGACGC CGCGGTCAAC GTGTTCGAAG CCGTGGTCGC GCATGTGCTG GCGTTGCAGG GCCAGCGCAA GAAGGTGGTG GTAGCGCTGT GGAGCGAAGG CTCGCGCGAC CGCATGGCGA GCATGCTGAG GGACCACAAG CTGCTCAACC TCACCTCGGT GAATTCCTGG CGCACGGTGC AGGCGACGCC GCGCAACGAG GCGATGCTGG CGGTGGTCGG CATGGAAGCC GGCTTCGAGA CCGACAGCGT CGCGGTGATC AGCGAGCAGG ACATTCTCGG CGACCGCCTG GTGCGGCCGC GCAAGGCCAG CCGCAAGCTC GACAATTTCA TTTCCGAAGT GACGAGTCTC GCCGCCGGCG ACCTCGTGGT CCATGTCGAG CACGGCATCG GTCGCTTCGT CGGGCTGCAG ACGCTGGAGG TCGGCGGCGC GCCGCATGAC TGCCTCGAGC TGCACTACGC CGCCGATACC AAGCTGTTTC TGCCGGTCGA AAATATCGAA CTGCTGTCGC GCTATGGCTC CGACCACGCC CATGTGGAAT TGGATCGGCT CGGCGGTTCG GGTTGGCAGG CTCGCAAGGC CAAGCTGAAA AACCGCATCC GCGAAATGGC CGGCGAGCTG ATCAAGATCG CCGCCGAACG GCATTTGCGC GAAGCGCCGA AATTGGTCGT GCAGCCGCAT CTGTATGACG AGTTCTGCGC ACGCTTCCCT TACGACGAGA CCGAGGATCA GCTCGGCGCG ATCCAGGCCT CGCTGCACGA TCTGGAAAGT GGCAAGCCGA TGGACCGGCT GGTCTGCGGC GACGTCGGCT TCGGCAAGAC CGAGGTGGCG CTGCGCGCCA CCTTTGCGGT GGCGATGGAA GGCAAGCAGG TCGCCGTGGT GGTGCCGACC ACGCTGCTGG CGCGGCAACA CGCGCGCAAT TTCACCGAGC GTTTCCGCGG CTTTCCGGTC AATGTCGGGC AGGCCTCGCG GCTGGTGCCG CCGAAAGAAC TCGCAAAGGT CAAGAAGGGC ATCGCCGAAG GCGCCATCGA CATCGTGGTC GGCACCCACG CGCTGCTCGG CAAGTCGATC AAGTTCAGGG ACCTCGGGCT GATCGTGGTC GACGAGGAAC AGCATTTCGG CGTCAGCCAC AAGGAACGGC TGAAGCAGCT GCGCGCCGAG GTGCACGTGC TGACGCTGAG CGCCACGCCG ATCCCGCGCA CGCTGCAGTT GGCGCTGACC GGGGTGCGCG ATCTGTCGAT CATCGCCTCG CCGCCGGTCG ATCGTCTGGC GGTGCGCACC TTCGTCGCGC CGCACGATCC GTTGATGATC CGCGAGGCGC TGCTGCGCGA GCGCTACCGC GGCGGCCAGG CGTTCTATGT CTGCCCGCGC ATCGAAGACC TCGCCGGTGT GAAGGATTTC CTCGACAAGC ACGTCCCGGA GATGAAGGTC GCGGTGGCCC ACGGCCAGAT GCCGCCGACG GTGATCGAGG ACATCATGTC GGCGTTCTAC GACGGCAAAT ACGACATCCT GCTGTCGACC ACGATCGTCG AGAGTGGCCT CGACATCCCC AACGCCAACA CGCTGATCGT GCACCGCGCC GACATGTTCG GCCTGGCGCA GCTCTATCAG CTGCGCGGCC GGGTCGGGCG TTCCAAGCTG CGCGCCTATG CGTTGTTCAC GCTGCCGTCG CAGCATCAGA TCACCGCGCA GGCGGAGCGC CGGCTCAAAG TGCTGCAATC GCTGGAGACG CTCGGCGCCG GCTTCCAGCT CGCCTCGCAC GATCTCGACA TCCGCGGCGC CGGCAATCTC TTGGGCGAAG AACAGTCCGG CCACATCAAG GAGGTCGGCT TCGAGCTCTA CCAATCGATG CTGGAAGAGG CGATCGTCAA CCTCAAGGCC GGCGTGGTCG AGCCGGTCGC CGACCGCTGG TCGCCGCAGA TCACCATCGG CATGCCGGTG CTGATCCCCG AAGAGTTCGT CGCCGACCTG TCGGTGCGGC TGTCGCTGTA TCGCCGGCTC GCCGATCTCG ACACCGACGA GGAGATCGAC GCCTTCGCCG CCGAACTACG CGACCGCTTT GGTCTATTGC CCGACGAGGT GCGCTATCTG TTCAAGGTCG CCGCGATCAA GGCGTATTGC CGCCGGGCCA ATGTCGAGAA GGTCGATGCC GGCCCGAAGG GCGTGGTGAT CTCGTTCCGC GACAACTCGT TCGCGCAGCC GGACCGGCTG GTGTTCTTCA TCAAGCAGCA CGGCAAGGCC GCCAAGGTGC GCCCGGATAT GAAGGTGGTG TTCCTGCAGG ACTGGGAAAC CCCGGAGGAG CGGCTGATCG GCACCACCGA AATCCTGCGC CAGCTCGCCA ATTTGGCGGA AGACCGCAAG GCGGCGTAG
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Protein sequence | MKSPTRSPAE LLAPGQALTF ANVAESAEGL IVSDLARAVA ARPKPPAVSL AVICRDGPRM QQLARSLEFF APDLAVMQFP AWDCQPYDRV SPHGGVLAQR LTTLARLSRL KGSDKPLIVL TTVNAIVQRV PAREVIAAQA LSVAPGHAVS MESIVAWLEH NGYNRSSTVR EPGEYAVRGG ILDLFPAGLD QPVRFDFFGD TLESIRTFDA ETQRTLLDMR ALDLVPISEF QLVTDTIRKF RMGYVAEFGA PLRDDQLYEA VSEGRRYPGM EHWLPLFQER MDTLFDYLDR TPIAIEPQGE DAARERFKQI GDYYLARREA RDIPGGGAIY NPLPPDRLYL AEPEWEKCLQ GVALARLTPF AVPADDGHVI DAAARAGRNF APERADAAVN VFEAVVAHVL ALQGQRKKVV VALWSEGSRD RMASMLRDHK LLNLTSVNSW RTVQATPRNE AMLAVVGMEA GFETDSVAVI SEQDILGDRL VRPRKASRKL DNFISEVTSL AAGDLVVHVE HGIGRFVGLQ TLEVGGAPHD CLELHYAADT KLFLPVENIE LLSRYGSDHA HVELDRLGGS GWQARKAKLK NRIREMAGEL IKIAAERHLR EAPKLVVQPH LYDEFCARFP YDETEDQLGA IQASLHDLES GKPMDRLVCG DVGFGKTEVA LRATFAVAME GKQVAVVVPT TLLARQHARN FTERFRGFPV NVGQASRLVP PKELAKVKKG IAEGAIDIVV GTHALLGKSI KFRDLGLIVV DEEQHFGVSH KERLKQLRAE VHVLTLSATP IPRTLQLALT GVRDLSIIAS PPVDRLAVRT FVAPHDPLMI REALLRERYR GGQAFYVCPR IEDLAGVKDF LDKHVPEMKV AVAHGQMPPT VIEDIMSAFY DGKYDILLST TIVESGLDIP NANTLIVHRA DMFGLAQLYQ LRGRVGRSKL RAYALFTLPS QHQITAQAER RLKVLQSLET LGAGFQLASH DLDIRGAGNL LGEEQSGHIK EVGFELYQSM LEEAIVNLKA GVVEPVADRW SPQITIGMPV LIPEEFVADL SVRLSLYRRL ADLDTDEEID AFAAELRDRF GLLPDEVRYL FKVAAIKAYC RRANVEKVDA GPKGVVISFR DNSFAQPDRL VFFIKQHGKA AKVRPDMKVV FLQDWETPEE RLIGTTEILR QLANLAEDRK AA
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