Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2559 |
Symbol | |
ID | 3970933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2776376 |
End bp | 2779504 |
Gene Length | 3129 bp |
Protein Length | 1042 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637925667 |
Product | acriflavin resistance protein |
Protein accession | YP_532428 |
Protein GI | 90424058 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0108247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGTCT CGGAGCCGTT CATCCGCCGT CCGATCGCCA CCTCGTTGTT GGGGGTGGCG CTGCTGCTCG GCGGCTTGCT GGGCTATCTG GCGCTGCCGG TGTCGGCATT GCCGCAGGTC GATTTCCCGA CCGTGCAGGT CACCACGCAA TTGCCGGGCG CGAGCCCCGA CGTGATCGCC TCGCTGATCA CCGCGCCGCT GGAACGCCAG CTCGGCCAGA TCCCGTCGCT GTCGGCGATG ACCTCGACGA GTTCGTTCGG CGTCAGCCAG GTGTCGCTGC AGTTCGACCT CAACCGCGAT ATCGATGGTG CTACGCAAGA CGTGCAGGCG GCGATCAACG CCGCAGCCGG CGTGCTGCCG AAGAACCTGC CGTATCCGCC GACCTACGCC AAAGTGAATC CCGCCGACGC CGCGGTGCTG ACGCTGGCGC TCACCTCCGA GACCAGTTCG ATGCGGGCGA TGAGCGACAT TGCCGACACG CTGCTGGCGC AGCGGCTCAG CCAAATCTCC GGCGTCGGCC GCGTCACCGT GCTCGGCGGG CTGAAGCCCG CTGTGCGGGT GCAGGCCGAT CTGGCGCGGC TCGCCGCCTA CGGCATCGCG ATGGAAGACC TTCGCACCGC GATTGCGGGC GCCAACGTCT CCGGGCCGAA GGGCTCGCTC GACGGCGCGC AGCAGGCCTA CACCATCGCC GCCAACGACC AGATCGCCGC CGCCGACGCC TACCGGCCGA TCATCATCGC CTACCGCAAC GGCTCGCCGG TGACGATCGG CGACGTCGCC TCGATCGTCG ATGGGCTGGA GAACGACCGC ACCGGCGGCT GGTTCAACGG CACCCCCGCG GTGATCCTCG ACATCCAGCG CCAGCCCGGC GCCAATGTCA TCGAGGTGGT GCGGCAGATC CGCGAGGAGA TCCCCAAGGT GCAGCGGGCG ATCCCGGCCG GGGTCAAGCT GACCGTGGTG TCGGACCGCA CCGTCACCAT CCGCGCCTCG GTGCACGACG TGCAGTTCAC GCTGCTGCTC AGCGTGATCC TGGTGACGCT GGTGGTGCTG TTGTTCCTGC GCTCAATGCG CGCCACCATC ATCGCTGGCG TAGCGCTGCC GCTGTCGCTG ATCACCTCGT TCGGCGTGAT GTATTTCGCC GGCTTCAGCC TCGACAATCT GTCGCTGATG GCGCTGACCA TCGGCACCGG CTTCGTGGTC GACGACGCCA TCGTGATGAT CGAGAACATC GTCCGCCACA TGGAAGACGG CGAAACCCCG ATGCAGGCGG CGCTCGACGG CGCCAGCGAG ATCGGCTTCA CGGTGATTTC GCTCACCGTG TCGCTGATCG CGGTGTTCAT CCCGCTATTG TTCATGTCCG GGCTGGTCGG CCGCATGTTC CGCGAATTCG CGCTGACCCT GACCATCGCG GTGGTGACCT CCGCGGTGGT GTCGCTGACG CTGACGCCGA TGATGTGCTC GCGGCTGTTG AAGCATCCCG GCGAGGAGCG GCAGATCCCC GGGCTCGCCA CCATCTCGGG CTGGATCGAC CGCTCCGCCG AGGCCTATCA CCGCTCGCTG TTGTGGGTGC TGCAGCGGCA GCGCGCCACG CTGGTTTTGA CCTTCGTCAC CGTGGCGGCG ACGCTGGCGC TTTATGTGAT CGCGCCGAAG GGCTTTTTGC CTTTGCAGGA CACCGCCTCG ATCACCGCGG TGACCGAAGC CGGACCCGAC GTGTCGTTCG CCGAGATGCA GGCGCGGCAG GCGGCGACCG CCGACGCCAT CAAGGCCGAT CCCGACGTCA CCGGCGTGGT CTCGGTGATC GGCGCGGGCT CGGTCAATCC GACCACCAAT GTCGGCCGCC TGGTGATGAA CCTGAAGCCG CGCGGCGAAC GCAAGGCTGA CGTCGCGCAG GTGATCGAGC GGCTCAAGCA ACGCGTCGCC GGCATCCCCG GCATGACGGT GTATTTCCAG GCGGTGCAGG ACGTCCAGAT TTCCACGCAG GCCAGCCGCT CGCAATATCA GTACACCTTG ACCGGCACCG ACGCCGCCGC GGTGTCGCTG TGGTCGAACA AACTGGTCGC CGAAATGCGC CGCGATCCCT TGTTCCGCGA CGTGTCGTCG GAGGCCCAGG AAGGCGGCTT GCGCGCCGCG CTTGATATCA ACCGGCAGCG CGCCGGCCAG CTCGGCGTCA GCATCCAGGC GATCAACGAC ACCTTGAACG ACGCGTTTGC GCAGCGGCAG ATTTCCACCA TCTACGGCCA GGCCAATCAG TACCGCGTGG TGCTGGAGGC GATGCCGCAG TATCAGCGCG ATCCCTCGAT CCTGTCCAAG CTCTACGTGC CCGGCACCGG CGGCGCTCAG GTGCCGATCT CGGCGGTGGC GGAGATGACG CGCACCACCG CGCCCTTGGC GATCTCGCAT CAGGCGCAGT TTCCGGCGGT GTCGCTCAGC TTCAACCTGG CGCCGGGCGA AGCGCTCGGC GACGCGGTCG ACGCGGTGAA GAGCATCGAG ACACGGATCG GCATGCCGGG CTCGATCGTC GGGCTGTATT CCGGCGACGC CGCGGAGTTC TCCAAGTCGC TGGCCGGGCA GCCCTGGCTG ATCCTCGCCG CATTGGTGAC GATCTACATC GTGCTCGGCG TGCTGTACGA GAGCTACATC CACCCGATCA CCATTCTGTC GACGCTGCCC TCGGCCGGCG TCGGCGCGAT CCTGGCCTTG ATGCTGTTCG GACAGGATCT CTCGGTGATC GGGCTGATCG GCATCATCCT GCTGATGGGC ATCGTCAAGA AGAACGCCAT CATGATGATC GACTTCGCGC TGGAGGCGGA GCGGCACAAG GGGCTGTCGT CCTACGACGC GATCGTGCAG GCCTGCCTGC TGCGCTTCCG GCCGATCATG ATGACGACGC TGGCGGCGCT GTTCGGCGCG CTGCCGCTGG CGATCGAAAG CGGCACCGGC GCCGAATTGC GGTTTCCGCT CGGCGTCTCG ATCGTCGGCG GCCTGCTGCT CAGCCAGCTG CTGACGCTCT ACACCACGCC GGTGATTTAT CTCGCGCTCG ATCGGCTCAA CCGCCGCATC GAAGGCGCGC TGCCGCCGGC GCCGGCGTCA CCTCCGCCGG TCGCCCGAGC TGCCGGGGAG GCGCCGTAG
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Protein sequence | MSVSEPFIRR PIATSLLGVA LLLGGLLGYL ALPVSALPQV DFPTVQVTTQ LPGASPDVIA SLITAPLERQ LGQIPSLSAM TSTSSFGVSQ VSLQFDLNRD IDGATQDVQA AINAAAGVLP KNLPYPPTYA KVNPADAAVL TLALTSETSS MRAMSDIADT LLAQRLSQIS GVGRVTVLGG LKPAVRVQAD LARLAAYGIA MEDLRTAIAG ANVSGPKGSL DGAQQAYTIA ANDQIAAADA YRPIIIAYRN GSPVTIGDVA SIVDGLENDR TGGWFNGTPA VILDIQRQPG ANVIEVVRQI REEIPKVQRA IPAGVKLTVV SDRTVTIRAS VHDVQFTLLL SVILVTLVVL LFLRSMRATI IAGVALPLSL ITSFGVMYFA GFSLDNLSLM ALTIGTGFVV DDAIVMIENI VRHMEDGETP MQAALDGASE IGFTVISLTV SLIAVFIPLL FMSGLVGRMF REFALTLTIA VVTSAVVSLT LTPMMCSRLL KHPGEERQIP GLATISGWID RSAEAYHRSL LWVLQRQRAT LVLTFVTVAA TLALYVIAPK GFLPLQDTAS ITAVTEAGPD VSFAEMQARQ AATADAIKAD PDVTGVVSVI GAGSVNPTTN VGRLVMNLKP RGERKADVAQ VIERLKQRVA GIPGMTVYFQ AVQDVQISTQ ASRSQYQYTL TGTDAAAVSL WSNKLVAEMR RDPLFRDVSS EAQEGGLRAA LDINRQRAGQ LGVSIQAIND TLNDAFAQRQ ISTIYGQANQ YRVVLEAMPQ YQRDPSILSK LYVPGTGGAQ VPISAVAEMT RTTAPLAISH QAQFPAVSLS FNLAPGEALG DAVDAVKSIE TRIGMPGSIV GLYSGDAAEF SKSLAGQPWL ILAALVTIYI VLGVLYESYI HPITILSTLP SAGVGAILAL MLFGQDLSVI GLIGIILLMG IVKKNAIMMI DFALEAERHK GLSSYDAIVQ ACLLRFRPIM MTTLAALFGA LPLAIESGTG AELRFPLGVS IVGGLLLSQL LTLYTTPVIY LALDRLNRRI EGALPPAPAS PPPVARAAGE AP
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