| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2558 |
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| Symbol | |
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| ID | 3970932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2774825 |
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| End bp | 2776180 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637925666 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_532427 |
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| Protein GI | 90424057 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0355119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTTTA AGCCGGAGCC CAAGTCTGCC CCCGGAGTCA TCGGGCCCGG CGTGGCTGCG
CCGCCGCCGC GCAAGCGGCG CCGGCTGTTG TCGCTCTTGA TCACCGCACT GATCCTGTGC
GTGCTCGGTT ATATCGCCTG GAGCTCGTTC CAGCAGAAGC AGACCGCCAA CCGGGTGCGG
CCGGATCTGG CAGTGCCGGT GCTGGCGGCG ACGCCGCGGG TGCAGGACGT GCCGGTGTAT
CTTGACGGCG TCGGCTCGGT GCGCGCGCTC AACAACGTCA CGGTGCGGGC GCAGGTCGAC
GGCAAGCTGA TCTCGATCAA CTTCAAGGAG GGCCAGGACG TCAAGCAGGG CGACGTGCTG
GCGGAGATCG ATCCGGCGAT CTATCAGGCG CAATACGACC AGGCGGTGGC CAAGAAGGCG
CAGGACGAAG CCCAGCTCGC CAATGCGCGG ATCGACCTTT CCCGCTATCA GCAGCTCGCC
GCCTCCAACG CCGGCTCCAA GCAGCAGGCC GACACCCAGC GCGCCACCGT GGCGCAGTTG
GAAGCCTTGG TGCGCTCCGA CCAGGCGGCG ATCGACAACG CCGCGGCGAC GCTCAGCTAC
ACCAAGGTGA TCGCGCCGTT GTCCGGCCGC GCCGGGCTCA GGCTGGTCGA CCAGGGCAAC
ATCATCCGCG CCTCGGATGC CACCGGCCTC GTGGTGATCA CCCAATTGCA GCCGATCGCG
GTGCAGTTCA GCCTGCCGCA GCAGCAGATC GTCCGGGTCA ACGCCGCGCA GGGCAAGGCG
CCGCTTAGCG TCGACGTGTT CGGCAATGAC GGCGTCACCG TGGTCGACAG CGGCACGCTG
CGCGGCATCG ACAACCAGGT CGATTCCACC ACCGGCACGG TGAAGCTGAA GGCGGAATTC
CCCAACGCGC GTTTCCAGCT ATGGCCGGGG CAGTTCGTCA ATGTGCGGCT GAAGGTCGAG
ACGCTGCCGC AGGCTTTGGT GATCCCGAGC TCGGCGGTGC AGCGCGGCCC GGCCGGTACC
TTCTCCTATG TGATCGGCGA GGGCGACGTC GTGTCAGCAC GGCCGGTCAC GGTGACGCAG
CAGAACGAGA CCGAGGCGGT GATCGCCAAG GGTCTTTCGG CCGGCGAGCG CGTCGTCACC
ACCGGCTTTG CCAACCTGTC CGACGGCGCC AAGGTCAGCG TCGGCGCTGG CGATCAGACG
CTGACGCCGG ATCTGGCGCC GCGCAAACGC CAAAGCAAGG GCGGCGCGCC GGGCGAGCGA
GGCAAGGGGG CTTCGAGCGA AGGCGATCAG AAGGGCCAGA CCGGACCGGC GCCGGCACCG
TCGAGCGCGC CGGCCGGTGG GGCGAAGCAG CCATGA
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| Protein sequence | MLFKPEPKSA PGVIGPGVAA PPPRKRRRLL SLLITALILC VLGYIAWSSF QQKQTANRVR
PDLAVPVLAA TPRVQDVPVY LDGVGSVRAL NNVTVRAQVD GKLISINFKE GQDVKQGDVL
AEIDPAIYQA QYDQAVAKKA QDEAQLANAR IDLSRYQQLA ASNAGSKQQA DTQRATVAQL
EALVRSDQAA IDNAAATLSY TKVIAPLSGR AGLRLVDQGN IIRASDATGL VVITQLQPIA
VQFSLPQQQI VRVNAAQGKA PLSVDVFGND GVTVVDSGTL RGIDNQVDST TGTVKLKAEF
PNARFQLWPG QFVNVRLKVE TLPQALVIPS SAVQRGPAGT FSYVIGEGDV VSARPVTVTQ
QNETEAVIAK GLSAGERVVT TGFANLSDGA KVSVGAGDQT LTPDLAPRKR QSKGGAPGER
GKGASSEGDQ KGQTGPAPAP SSAPAGGAKQ P
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