Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2442 |
Symbol | |
ID | 3971372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2642244 |
End bp | 2643467 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637925550 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_532312 |
Protein GI | 90423942 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.809903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.321303 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAG TTCCATTGCG AAACGCCAAA GTCGCGGCGT CGGGTGTCCG TAGCGTCAGC GTGCTCGGGG CCACCGGGTC GATCGGCGAC AGCACGATGG ACCTGCTGCG GGCCTCGCCC GAGCGCTACC AGGTCGAGGC GCTGACCGCG AACACCAACG TCGCCGGCCT CGCCAAGCTG GCCCGCGAAT TCAACGCCCG CTTCGTCGCG GTGGCCGATC CCGCGCGCTT GAGCGAATTG CGCGCGGCGC TGGCCGGAAC CGGCATCGCC TGCGGAGCAG GGGACAGCGC CATCGTCGAA GCCGCCGAGC GGCCGGCGGA TTGGGTGATG GCGGCGGTCG CTGGCGCCGC CGGGTTGAAG CCGACGCTGG CCGCGGTCGA CCGCGGCGCT CACGTCGCGC TCGCCAACAA GGAATGCCTG GTTTGCGCCG GGGAATTCTT CATGGACCGC GCGGCGAAAG CCGGCGCCAC CATCCTGCCG GCGGATTCCG AACACAACGC GCTGTTCCAA GCGCTCGCCT CCGGCAACCG CGACGAACTC ACCAAGGTGA TCATCACCGC CTCGGGCGGC CCGTTCCGCA CCTGGGCCGC CGCCGATATC GAGCAGGCGA CGCTGGCGCA GGCCTTGAAG CATCCGAACT GGAGCATGGG GCAGAAGATC ACCATCGATT CGGCGTCGAT GATGAACAAG GGCCTCGAAG TGATCGAGGC GTCCTGGCTG TTCGCGCTGT CGCCCGACGA GATCGACGTG GTGGTGCATC CGCAGTCGAT CATCCACGGC ATGGTGGAGT TTTCCGACCG CTCGGTGGTG GCGCAACTGG GGTCGCCCGA CATGCGCACC CCGATCGCGC ATTGCCTCGG CTGGCCCGAC CGCATCGTCG GCCGTGCCGC GCCGCTCGAC CTCGCCAAGA TCGGAACCCT GACCTTCGAG GCGCCGGATT ATGCCCGGTT CCCTGGTTTG AAGCTGGCCT ATGAGGCGTT GCGCGCCGGC AACGGCGCCA CCACGGTGTA CAATGCCGCC AACGAGGTCG CGGTGGCCGC GTTCATCGCG CAGCGGATCC GGTTCGGCGC GATCGCACGC CTGGTCGAGG AAACCATGAG TTCCTGGATC CGCGCCGGCA ATCAGGCGCC GTTGAGCTGC GCCGACGACG CCATCGCGGT CGACCACAGC GCGCGAAATA TGGCTGCCGC GCTATTGCCT CAAATTGCCG CAAAGGCATC CTAG
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Protein sequence | MSAVPLRNAK VAASGVRSVS VLGATGSIGD STMDLLRASP ERYQVEALTA NTNVAGLAKL AREFNARFVA VADPARLSEL RAALAGTGIA CGAGDSAIVE AAERPADWVM AAVAGAAGLK PTLAAVDRGA HVALANKECL VCAGEFFMDR AAKAGATILP ADSEHNALFQ ALASGNRDEL TKVIITASGG PFRTWAAADI EQATLAQALK HPNWSMGQKI TIDSASMMNK GLEVIEASWL FALSPDEIDV VVHPQSIIHG MVEFSDRSVV AQLGSPDMRT PIAHCLGWPD RIVGRAAPLD LAKIGTLTFE APDYARFPGL KLAYEALRAG NGATTVYNAA NEVAVAAFIA QRIRFGAIAR LVEETMSSWI RAGNQAPLSC ADDAIAVDHS ARNMAAALLP QIAAKAS
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