Gene RPC_2300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2300 
Symbol 
ID3973741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2500029 
End bp2500766 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content65% 
IMG OID637925408 
Product3-oxoacyl-(acyl-carrier-protein) reductase 
Protein accessionYP_532173 
Protein GI90423803 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0918045 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGATT TATCAGGCAG GACCGCGTTG GTGACCGGCG CGACCGGAGG CATCGGCGGT 
GCGATCGCGC AAGCGCTGCA CGCTCAGGGC GCCACGGTGG CGATCTCCGG GACGCGACGC
GAGGCGCTGG AGGCACTCGC CGCCAAGCTC GGCGAGCGGG TTCATGTGCT GCCCTGCAAT
CTGTCCGACA CAGCCGAGGT CGAGGCGCTG GTGCCGGCCG CCGAGAAGGC GATGGGGCAG
CTCGACATCC TGGTCAGCAA CGCCGGTATC ACCCGCGACA ATCTGTTCGT GCAGCTGCGC
GACGAGGACT GGGACGAGGT GATCAAAGTC AATCTGACCG CGACGTTTCG GCTGGCGCGC
GCCGCCACCA AATTGATGAT GCGCAAGCGG TTCGGCCGCA TCATCGCGAT CACTTCGGTG
GTCGGCGTCA CCGGAAATGC CGGGCAGGGC AATTACGCCG CGTCGAAAGC CGGCCTGATC
GGCATGATCA AGACGCTCGG CGCGGAATAT GCCAAGCGCA ACGTCACCGC CAACTGCATC
GCACCCGGAT TCATCGCCAC GTCGATGACC GAGGTGCTCA ACGACAAGCA GCGCGAAGCG
ATTCTCACCA AGGTGCCGGC GGGGCGGCTC GGCACCCCGG AAGATATCGC CGCGGCGGCG
GTGTATTTGG CCTCCAACGA AGCCGCCTAC GTCACCGGCC AGACAATTCA CGTCAACGGC
GGGATGGCGA TGATCTAA
 
Protein sequence
MFDLSGRTAL VTGATGGIGG AIAQALHAQG ATVAISGTRR EALEALAAKL GERVHVLPCN 
LSDTAEVEAL VPAAEKAMGQ LDILVSNAGI TRDNLFVQLR DEDWDEVIKV NLTATFRLAR
AATKLMMRKR FGRIIAITSV VGVTGNAGQG NYAASKAGLI GMIKTLGAEY AKRNVTANCI
APGFIATSMT EVLNDKQREA ILTKVPAGRL GTPEDIAAAA VYLASNEAAY VTGQTIHVNG
GMAMI