| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2238 |
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| Symbol | |
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| ID | 3973255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2441145 |
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| End bp | 2443517 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925346 |
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| Product | ribonuclease R |
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| Protein accession | YP_532111 |
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| Protein GI | 90423741 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.37194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0587886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACGA AAAAGCGCGA CACCAGCTTT CCCGATCGCG ACGCGCTCGT CGCCTTCATC
CGCGCCCAGC CGGGCAAGGT CGGCACTCGC GAAATCGCCC GCGCGTTCGG CCTCAAGAAC
GAGGATCGCG TCGAACTGAA GCGGGTGCTG CGCGACCTCG CCGACGCCGG CACCATCAAG
CGCCGCGGCA AGATCGTGGC CGAACCCGAG GCGCTGCCGC CGACGTTGAT GGCCGATATC
ACCGCGCGCG ACGATGATGG CGAACTGATC GCCACGCCGA CCGAGTGGGA CGAGCAGAGC
GGCGAGCCAC CGAAGATCCG CATCCATGTG CCGCGCCGCG CGGCGCCCGG CACCGCGGCC
GGCATCGGCG ACCGTGCGTT GCTGCGCGTC GAGCCGGGTG CGGAGGCCTA TCGCGCCCGC
GTCATCAAAG TCGTCGATCA GACCAAGACG CGCATCCTTG GGATCTTCCG CGCGCTGCCC
GGCGGCGGCG GACGGCTGAT TCCTGTCGAC AAGAAACAGG TCGGCCGCGA ATTCAACATC
GCCGCCACGG ACGCCGGCGG CGCGCAGGAC GGCGATCTGG TCAGCGTCGA TCCGATCCGC
ACCCGCGGCT ATGGTCTTGC GTCCGGCAAG GTGAAAGAGC GCTTGGGATC GCTCGCCACC
GAAAAGGCGG TCAGCCTGAT CGCGATCCAC TCCCACGAAA TCCCGCAGGA ATTCTCCGCT
GAAGCCATTC GCGAGGCCGA CGCCGCCAAG CCCGCGAGCC TGAAAGGCCG CGAGGACTGG
CGCGAATTGC CGCTCGTCAC CATCGATCCG CCCGACGCCA AGGATCACGA CGACGCGGTG
CACGCCGAGC CCGACCCCGA TCCGAACAAC AAGGGCGGCT ACATCCTCCA CGTCGCGATC
GCCGACGTCG CCTACTACGT GCGGCCGCAA TCGGCGCTCG ATCGCGACGC GCTCACCCGC
GGCAATTCGG TGTACTTCCC CGACCGCGTG GTGCCGATGC TGCCGGAGCG GATCTCCAAC
GATCTGTGTT CGCTGAAGCC GGGCGAAGCG CGCGGCGCCC TCGCCGTCCG CATCGTGATC
GGCCCGGACG GCCGCAAGCA CTCGCACTCG TTCCACCGCA TCCTGATGCG CTCGGCGGCG
AAACTGAGCT ACGCGCAGGC GCAGGCCGCG ATCGACGGAC ATCCCGACGA TACGACCGGC
CCGTTGCTCA AGCCGATCCT GCAGCCGCTG TACGACGCCT ACGCGGTGGT GAAGCGCGGC
CGCGACGAGC GCGATCCGCT CGATCTCGAC CTGCCGGAGC GCAAGATCCT GTTGAAGCCC
GACGGCACCG TCGACCGCGT CATCGTCCCG GAGCGGCTCG ACGCGCATAA GTTGATCGAG
GAATTCATGA TCCTCGCCAA CGTCGCCGCC GCCGAGATGC TGGAGAAGAA GGCGCTGCCG
CTGATCTATC GCGTGCACGA CGAGCCCAGC GTCGAAAAGG TGCACAACCT GGTCGAATTC
CTCAAGACGC TGGATCTGTC GTTCGCCAAG CAGGGCGCGC TGCGGCCCTC GCTGTTCAAC
CGCGTGCTGG CACAGGTCAA AGGCCACGAC GCCGAACCCT TGGTCAACGA AGTGGTGCTG
CGCTCGCAGG CGCAGGCCGA ATACGCCTCG CAGAATTACG GCCATTTCGG CTTGAACCTG
CGCCGCTACG CGCATTTCAC CTCGCCGATC CGCCGCTACG CCGACCTCGT GGTGCATCGC
GCCTTGATCC GCGCGCTCAA TCTCGGCGAC GGCGCGCTGC CCGACACCGA GACCGTGGAG
ACGCTCGCCG AAGTCGCGGC GCAGATCTCG GTCACCGAAC GCCGCGCCAT GAAGGCCGAG
CGCGAAACCA CCGACCGGCT GATCGCGCAT TTCCTCGCCG ACCGCATCGG CGCCTCGTTC
CAGGGGCGGA TTTCCGGCGT CACCCGCGCC GGGCTGTTCG TCAAACTCGC CGACACCGGC
GCCGACGGAC TGATCCCGAT CCGCACCATC GGCAGCGAGT ACTTCAACTA CGACGAAACC
CGCCACGCGC TGATCGGAAC CCGTTCCGGT ACCATCTATC GGCTCGGCGA CGTGGTCGAC
GTGCGGCTGG TGGAGGCCAC TCCCGTGGCC GGCGCGCTGC GCTTTGAACT GTTGGGCGAC
GGCGGCGTTG TTGCGGGCGG CCGTCCGCGT CCCCATATTC GTAGCCGTGG GGCGGCGTCG
TCGGAGCCCC GCAGCAAGGC CCACCCCGGA CGCAATCCGA GCAAAGCCAA GAAAGACAAG
AAGTCCAAGC CGCCGAAGCG CGACCGCAAG AGCAAGATCA AGAAAGCCAA CAAGGCCAAA
GGCGGAACAC CCGGCAAGCC GAAGAAGGGC TGA
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| Protein sequence | MSTKKRDTSF PDRDALVAFI RAQPGKVGTR EIARAFGLKN EDRVELKRVL RDLADAGTIK
RRGKIVAEPE ALPPTLMADI TARDDDGELI ATPTEWDEQS GEPPKIRIHV PRRAAPGTAA
GIGDRALLRV EPGAEAYRAR VIKVVDQTKT RILGIFRALP GGGGRLIPVD KKQVGREFNI
AATDAGGAQD GDLVSVDPIR TRGYGLASGK VKERLGSLAT EKAVSLIAIH SHEIPQEFSA
EAIREADAAK PASLKGREDW RELPLVTIDP PDAKDHDDAV HAEPDPDPNN KGGYILHVAI
ADVAYYVRPQ SALDRDALTR GNSVYFPDRV VPMLPERISN DLCSLKPGEA RGALAVRIVI
GPDGRKHSHS FHRILMRSAA KLSYAQAQAA IDGHPDDTTG PLLKPILQPL YDAYAVVKRG
RDERDPLDLD LPERKILLKP DGTVDRVIVP ERLDAHKLIE EFMILANVAA AEMLEKKALP
LIYRVHDEPS VEKVHNLVEF LKTLDLSFAK QGALRPSLFN RVLAQVKGHD AEPLVNEVVL
RSQAQAEYAS QNYGHFGLNL RRYAHFTSPI RRYADLVVHR ALIRALNLGD GALPDTETVE
TLAEVAAQIS VTERRAMKAE RETTDRLIAH FLADRIGASF QGRISGVTRA GLFVKLADTG
ADGLIPIRTI GSEYFNYDET RHALIGTRSG TIYRLGDVVD VRLVEATPVA GALRFELLGD
GGVVAGGRPR PHIRSRGAAS SEPRSKAHPG RNPSKAKKDK KSKPPKRDRK SKIKKANKAK
GGTPGKPKKG
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