Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2226 |
Symbol | |
ID | 3973224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2425450 |
End bp | 2427543 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637925334 |
Product | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding |
Protein accession | YP_532099 |
Protein GI | 90423729 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0438642 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.712882 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGACG TCGTCAAGCT GGAACGCCAT GATGCGATCG CCATCGTCAC GGTGGATAGT CCGCCGGTCA ACGCGCTGAG CGCGGCGGTG CGTCGCGGCA TCTCCGAAAC CGTCAAGCAG GCGATCGCCG ATCCCGCGGT GCAGGCGATC GTGCTGACCT GCGCCGGCCG CACCTTCATC GCCGGCGCCG ACATCACCGA ATTCGGCAAG CCGCCGCAGT CGCCGGGCCT CGGCGAAGTC ATCACCGAGT TGGAGAATTC GCCGAAACCG ATCGTCGCGG CGATCCACGG CACCGCGCTC GGCGGCGGGC TCGAAGTGGC GCTCGGCTGC CATTTCCGCG TCGCGGTAAA AGACGCCAGG CTCGGTCTGC CGGAGGTGAA GCTTGGACTG TTACCAGGGG CGGGCGGCAC GCAGCGGCTG CCGCGCGCGG TCGGCCCGGA GTTGGCCGTG AAGATGATCG TCGGCGGCGA TCCGATCGGC GCCGCCGAGG CGCTGCAGCA CGGCCTGATC GATGAAATCG TCGAGGCGAC CGCTGCCGGC GGCGAGGCCT TCGCGCGCAA GGTGCTGGCG GAGCAACGCG GCCTGCGCAG ACTGCGCGAC GACGACTCCA AATTGCAGGC GGCGAAGACC GACCGCTCGA TCTTCACGCA AGCCGTGGCT TCGATGACCA AGAAGGCGAG GGGGCTGGAA GCGCCGTTCG CCGCCGCCGA CGCGGTCGGC GCCGCGATCG ATCTGCCGTT CGACGAGGGG CTGAAGCAGG AGCGCGACGG CTTCATGAAG CTGGTCACCG GCGAGCAGTC GAAGGCGCAG CGCTACGCGT TCTTCGCCGA GCGCGAGGCC GCCAAGGTCT CCGTGCCGGA CGGCACCAAG CCGCGGCCGG TGGCGCGCGT CGCCATCATC GGCGCCGGCA CCATGGGCGG CGGCATCGCG ATGTCGTTCG CCAACGCCGG AATTCCGGTG ACGCTGATCG AGACCGGCGA GCAGCAATTG AAACGCGGCC TCGGCGTGAT GCAGAAGAAC TACGACGCCA CCGCCGCGCG GGGAGGAATC CCCGCCGACG CGCCGGCCAA GCGGATGGCG CTGATCAACG GCGTGGTCGG TCTGGAGCAC GTCAAGGACG CCGATCTGGT CATCGAAGCG GTGTTCGAAA CCATGGCGGT GAAGAAAGAA GTCTTCACCG CGATCGACGC CTACGCCAAG CCCGGCGCGG TGTTGGCGTC GAACACGTCT TATCTCAACA TCGACGAGAT CGCCCAGGTC ACCAAGCGGC CGGAGGACGT GCTCGGCATG CACTTCTTCT CGCCGGCCAA TGTGATGAAG CTGTGCGAGA TCGTCCGCGC CGACAAGACC GCGCCGGACG CGCTGCTGAC GGCTGTGGCG ATCGCGCGAA AAATCGCCAA GGTGCCGGCG GTGGTGGGCG TCTGCGACGG CTTCGTCGGC AACCGCATGC TGGCGGCGCG CGGCAAGCAG GCGGAAAGAC TGTTGTTCGA AGGCGCGCTG CCGCAGCAGG TCGACGCCGT GGTGACCAAG TTCGGCATGC CGATGGGGCC GTTCGCGATG GGCGATCTCG CCGGCCTCGA TATCGGCTGG CGCTCGCGGA AGGATCGCGG CATCAAATCG GAAATCGCCG ACGCATTGTG CGAGGCCGGC CGGTTCGGCC AGAAGACCGG CAAGGGCTAC TACAAGTACG AGGCGGGCTC GCGCGCGCCA TTGCCCGATC CGGAGGTCGA GGCGCTGATC AACGACACGC TGAGCAAGCT CGGGCTGAAG CGCCGCGAGG TCTCCGACGA GGAGATCCTC GAGCGGATGA TGTATCCGAT GATCAACGAG GGGGCGCGGA TTCTCGAAGA GGGCATCGCG GCGCGTCCCT CCGACATCGA CGTGATCTGG CTGTACGGCT ACGGCTGGCC GATCTATCGC GGCGGACCGA TGTACTATGC CGACCAGGTC GGCTTGAAGC ACGTCGCCGA GCGGCTGAGC TACTACGCCA AGGCGACCAA CGATCCCACG CTTGAGCCGG CGCCGCTGCT GGCGCGGCTC GCCGCCGAGG GCGGCTCATT CGCCACGCTG ACGCAGCGGG CGAAAGCCGC GTGA
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Protein sequence | MTDVVKLERH DAIAIVTVDS PPVNALSAAV RRGISETVKQ AIADPAVQAI VLTCAGRTFI AGADITEFGK PPQSPGLGEV ITELENSPKP IVAAIHGTAL GGGLEVALGC HFRVAVKDAR LGLPEVKLGL LPGAGGTQRL PRAVGPELAV KMIVGGDPIG AAEALQHGLI DEIVEATAAG GEAFARKVLA EQRGLRRLRD DDSKLQAAKT DRSIFTQAVA SMTKKARGLE APFAAADAVG AAIDLPFDEG LKQERDGFMK LVTGEQSKAQ RYAFFAEREA AKVSVPDGTK PRPVARVAII GAGTMGGGIA MSFANAGIPV TLIETGEQQL KRGLGVMQKN YDATAARGGI PADAPAKRMA LINGVVGLEH VKDADLVIEA VFETMAVKKE VFTAIDAYAK PGAVLASNTS YLNIDEIAQV TKRPEDVLGM HFFSPANVMK LCEIVRADKT APDALLTAVA IARKIAKVPA VVGVCDGFVG NRMLAARGKQ AERLLFEGAL PQQVDAVVTK FGMPMGPFAM GDLAGLDIGW RSRKDRGIKS EIADALCEAG RFGQKTGKGY YKYEAGSRAP LPDPEVEALI NDTLSKLGLK RREVSDEEIL ERMMYPMINE GARILEEGIA ARPSDIDVIW LYGYGWPIYR GGPMYYADQV GLKHVAERLS YYAKATNDPT LEPAPLLARL AAEGGSFATL TQRAKAA
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