| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2173 |
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| Symbol | |
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| ID | 3969155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2365523 |
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| End bp | 2369065 |
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| Gene Length | 3543 bp |
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| Protein Length | 1180 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637925281 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_532046 |
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| Protein GI | 90423676 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.193519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACTG CTGACACCAT CCGAGGCCGG TCCGGCCCGT GCGGACGCGT CCTGCGCGGC
CTGCTGACCT CGCTGTTGTC ACTCGGGTGT GTGCTCTGCC TGTTCGGCAC CGCTGCCCGC
GCGATCGATG TCGGCAGTCG TGGCGATTGG GATAACGCCG TCGTAGCGGT CGGCGCGGCC
GCCGCGGGGG CCACGGTCAC CATCAACATC ACCGCCGGCT TCACGCTGAC GAGTTCGCTG
CCGCAGCTGT TGGCCGTCCA ACTCAACGTC ACCGTCAACG TCAACGGCAA CGGCCTGGTG
ATCGACGGCG GCTCGACCTA TCAGGGCATC CAGGTCAACG GCGCCAATGC CTTGACCGTC
AACATTTCCA ATCTGTCGGT GATCAACACC AAGGCGACCG GCGGCAGCGG CTTGGCCGGG
GAGAACGGCT ATTACAGCGG CGGGCTGTCC TACGGCTCGG GCGGCGGTGG CGGCGGCGGG
CTCGGCGGCG GCGGCGGCCT CTTGGTCGGC AGCGGCGCCA TCGTGACGCT GAGCGCGGTG
ACCTTCACCG GCAACATCGC GCAAGGCGGC GCCGGCGGCG TGGGCGGTTC GGCACAGAAT
ACGGTTTCGG ATCCGGTCAA TGGCGGCAAT GGCGGTGCCG GCGGCGTCGC CAATAATTCC
GGAGCGACCG GCGGCGGCGG CGCCGGCGGC ACCGGCGGCC ACACCGGCAC CCAGGGAACC
GCCGGGTCGC CGGGAGCGGC GTTCGGCGAT GGCGGCGGCG GCGGCGGCGG CTCCGGCACC
ACCGCGAGCA TCAACTACAC CTCGAATAAT CCCGGCGGCA GCGGCAATGC TAACGGCGGC
GCCGGCGGGC AGGGCGGCGA CGGTGCCACC AACGCCAGCG GCGCCGGTGG ACCGGGGCCG
GGCGCGGACG GCGGCAACGG CGGCGTCGGC GGCGGTGCCC GCGGCGGCGC GATCTATGTC
GCCACCGGCG GCAGCCTGAC CATTCTCGAC ACCCCGGTCA ACGGCGCCAC TGCTATCGGC
GGCGCCGGCG GCACCGGCGG CACCGGCACC GGTCCGAGTG CGATCCCCGG CGGCGCCGGC
AGCACCGGCA GCACCGCCGG CGCCGGCATC TTTCTCAGCG GCGTGATGGC CAATATCGGA
GTGTCGGCGG GCAACGTCAC CTATGCCAAC AGCATCGGCG GCACCGGCCT GACCACCGGC
GGCGTCAACA CCGCGATCAC CAAGCTCGGC GCCGGCACGC TGGCGCTGTC GGCGACCAAT
GATTTCACCG GCAATGTCGC GATCGCCGCC GGCACGCTGT CGATCGCCGC CACGGCCAAT
CTCGGCAACG TCGCCAATGA CGTGGTGATC TCGGACGGCG CCGGCCTGGC CGTCACCGCG
ACGACGACGC TGGCCGCTGC CCGTGCCTTC TTCATCGCAG GCACGTCCAC CATCGACGTC
GCCAGCGCCA CCACCACGAC GCTGCAGGGC GTCGTCGGCA ACGGCACCTC GGCCGGCTCG
CTGGTCAAGA GCGGCGACGG CACGCTGTTG CTGTCGGCGA CCAACACCTA CAGCGGCGCC
ACCACGGTTT CCGGCGGCAC GCTGCGCGCC GGGGCGTCGA ATGCGATCCC GAGCGGCACC
GCGATGACCG TCGCCAATGC CGCGACCTTC GACCTCAACG GCTTTGCGCG CGGGCTCGGC
TCGCTGGCCG GCGCCGGCAC CGTCAGCAAT GGCGGCGGCA GCGCCGTCAC GCTGACCACC
GGCAGCAACG GCACCGACAC CGTGTTCTCC GGCGTCGTGC AGAACGGCGT CAATGCGGTG
TCGCTGACCA AGACCGGCGC CGGCCAGCTG ACGCTCGACG GCGCCAACGC CTATTCGGGC
GCCACCACGG TCAACGCCGG CACGCTTTCG GTGAACGGTT CGATCGCGAG CTCGGCGCTG
ACCAGCGTCA ATGCCGGCGC CACGCTCGCC GGCACCGGCA GCGTCGGCAA CACCACGATC
AATGGCGGTA CACTCGCCCC GGGCAATTCG ATCGGCACGC TGAGCGTGAC CGGCAACCTC
ACCCTCACGG CCGCCGCGAG CTACATGGTC GAAATCTCGC CGACCGCCTC CGACCGCACC
AACGTCAGCG GCACAGCGAC GCTCGGCGGC GCCACGGTGA ATGCCAGTTT CGCGGCCGGC
AGCTATGCCA ACAAGCAATA CACCCTGGTC AATGCCACCG GCGGCATCAT CGGCACCTTC
GGGGCGCTCT CGAACAGCAA CCTGCCGTCC GGCTTCAAAT CCAGCCTCGG CTACGACGCC
AATAACGCCT ATCTCGATCT GGTGCTCGAC CTGGCGCCGA CGCCTTCCCC GACCGGAGAC
ACGCCTGCGG TCGGCCTCAA CGTCAACCAG GCCCGGGTCG CCAGCGCGCT GAGCAATTAC
TTCGCCAGGG CCGGCAGCAT TCCGATGGTG TTCGGCGCGC TGACGCCGGC CGGGCTGAGC
ATCGCGGCGG GCGAGCCGGC CACCGGCATG CAGCAGTCCA CATTCACTGC GATGACGCTG
TTCATGGGCG TGCTGACCGA TCCGTTCGCC GCCGGACGCG GCGTCGATCC GTCGAGCGGC
GCTGCGGCCT TCGCCGACGC GGCCGGCGAG CGCGGCGCGC CGCGTGGCGC CTTTGCGATG
GTCGGCAAGG CGGTGCCGCA TCCGCTGCCG CGCCCGATCG TCGAGCCGCG CTGGAACGTC
TGGGCCGCGG GCTTCGGCGG CTCGCAGACC ACCGACGGCA ACGCGTCGCA GGGATCCAAC
CGCGCCACCT CGCGGCTGGC CGGCACCGCG GTCGGCGCCG ACTATTGGCT GTCGCCGATG
ACCGTCGCTG GCGTGGCACT GGCGGGCGGC GGCAGCAGTT TCGGCGTCGA TGGATTGGGC
AGCGGCCGTT CCGACCTGTT CCAGGCCGGC GCCTTCATCC GGCATCAGCG CGGCGCGGCT
TACGTCACCG CCGCCGCCGC TTACGGCTGG CAGGACGTCA CCACCGACCG CACCGTCGCG
CTCGGCGGGC TGGCGCAGTT GCACGGCAGC TTCAACGCCA ACGCCTATTC CGGCCGCGTC
GAAGCCGGCA ACCGCTATCT GCTGCCGAGC TTCGGCGGAT TTGGCAGCTT CGGCCTGACG
CCCTACGCCG CGGCGCAAGT CACCGCGTTC GATCTGCCGG CCTATGCCGA GCAGGCCAAT
GCCGGCCCCA ACACCTTCGC GCTGGCCTAT GGCGCCAAGA CCGCCACCGC GACCCGCAGC
GAACTGGGCC TGCGCAGCGA CAAGGCGTTC GCGCTCAACG CGGCGCTGTT GACGCTGCGC
GGCCGCGTCG CCTGGGCGCA TGATTTCGAT ACCGACCGCA GCCTCGCCGC GACCTTCCAG
ACGCTGCCGG GGGCGTCCTT CGTGGTCGGC GGCGCCAGGG TGGCGCGCGA TGCCGCGCTG
ACCACGGCGC AGGCGGAACT GAGCTTCGCC GGCGGCATCT CGCTGCTGGC GAGCTTCGAG
GGCGAGTTCT CCGACGTCAG CCGCTCCTAT GCCGGCAAGG GCGTGGTGCG CTACGCTTGG
TGA
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| Protein sequence | MTTADTIRGR SGPCGRVLRG LLTSLLSLGC VLCLFGTAAR AIDVGSRGDW DNAVVAVGAA
AAGATVTINI TAGFTLTSSL PQLLAVQLNV TVNVNGNGLV IDGGSTYQGI QVNGANALTV
NISNLSVINT KATGGSGLAG ENGYYSGGLS YGSGGGGGGG LGGGGGLLVG SGAIVTLSAV
TFTGNIAQGG AGGVGGSAQN TVSDPVNGGN GGAGGVANNS GATGGGGAGG TGGHTGTQGT
AGSPGAAFGD GGGGGGGSGT TASINYTSNN PGGSGNANGG AGGQGGDGAT NASGAGGPGP
GADGGNGGVG GGARGGAIYV ATGGSLTILD TPVNGATAIG GAGGTGGTGT GPSAIPGGAG
STGSTAGAGI FLSGVMANIG VSAGNVTYAN SIGGTGLTTG GVNTAITKLG AGTLALSATN
DFTGNVAIAA GTLSIAATAN LGNVANDVVI SDGAGLAVTA TTTLAAARAF FIAGTSTIDV
ASATTTTLQG VVGNGTSAGS LVKSGDGTLL LSATNTYSGA TTVSGGTLRA GASNAIPSGT
AMTVANAATF DLNGFARGLG SLAGAGTVSN GGGSAVTLTT GSNGTDTVFS GVVQNGVNAV
SLTKTGAGQL TLDGANAYSG ATTVNAGTLS VNGSIASSAL TSVNAGATLA GTGSVGNTTI
NGGTLAPGNS IGTLSVTGNL TLTAAASYMV EISPTASDRT NVSGTATLGG ATVNASFAAG
SYANKQYTLV NATGGIIGTF GALSNSNLPS GFKSSLGYDA NNAYLDLVLD LAPTPSPTGD
TPAVGLNVNQ ARVASALSNY FARAGSIPMV FGALTPAGLS IAAGEPATGM QQSTFTAMTL
FMGVLTDPFA AGRGVDPSSG AAAFADAAGE RGAPRGAFAM VGKAVPHPLP RPIVEPRWNV
WAAGFGGSQT TDGNASQGSN RATSRLAGTA VGADYWLSPM TVAGVALAGG GSSFGVDGLG
SGRSDLFQAG AFIRHQRGAA YVTAAAAYGW QDVTTDRTVA LGGLAQLHGS FNANAYSGRV
EAGNRYLLPS FGGFGSFGLT PYAAAQVTAF DLPAYAEQAN AGPNTFALAY GAKTATATRS
ELGLRSDKAF ALNAALLTLR GRVAWAHDFD TDRSLAATFQ TLPGASFVVG GARVARDAAL
TTAQAELSFA GGISLLASFE GEFSDVSRSY AGKGVVRYAW
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