Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2105 |
Symbol | |
ID | 3973661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2306268 |
End bp | 2307383 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637925213 |
Product | extracellular solute-binding protein |
Protein accession | YP_531978 |
Protein GI | 90423608 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.681994 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTGTT CGACCGGCTT GCAAAAATTG CGCTTTGTCG CAGCCATGAT CGGTTGCGCG GTCCTACTGC TGTCGCCCGC CCGCGCCGAA CAGCGCGTCG TCAACTTCTA CAACTGGTCG AACTACATCG CCCCCGGCGT GCTCGACGAG TTCAGCCGCG AGACCGGCAT CAAGGTGATC TACGACACCT TCGACGGCAA CGAGACGCTG GAAACGCGGC TGTTGGCGGG AAAATCCGGC TACGACGTGG TGGTTCCGAC CGCGTATTTC CTGCAGCGGC AGATCGCCGC CAATATTTTC CAGAAGCTCG ACAAGGCGAA GCTGCCGAAC CTCGGCAACG CCTGGGACGT CGTGACCAAG CGGCTGGCGA CCTACGATCC CGGCAACCGC TTTGCCGCGA ACTACATGTG GGGCACCACC GGGATCGGCT ACAACGTCGC CGCAGTGCGC AAGATCCTCG GCGAGGGCGC TGTGATCGAC AGCTGGGCCA CGGTGTTCAA GCCGGAGAAT CTGGCGAAAT TCACCGAGTG CGGCGTGCAC ATGCTGGACT CGCCCGATGA TATTTTGCCG GCTGCGCTGA CCTATCTCGG CCTCGATCCG AACTCCACCA AGCCGGCCGA TCTGGAAAAA GCCGCCGATC TGGTCGGCAA GATCCGACCC TATGTCCGCA AGTTTCATTC CTCGGAATAT CTCAACGCGC TAGCGACCGG CGAAATCTGC CTGGTGGTCG CCTGGTCGGG CGACATCATG CAGGCGCGCA GCCGCACCGC CGAGGCCAAC AATGGCGTCG AGATCGGCTA TTCGATTCCG AAGGAAGGCG CGCAGATGTT CTTCGACAAT CTGGCGATCC CGGCCGACGC CAAGAACGTC GCCGAGGCGC ACGAACTGAT CAACTATCTG TACCGCCCCG ACGTCGCGGC GAAGAATTCC GGCTTCCTGT CCTACGCCAA CGGCAATCTG GCCAGCCAGA AGCTGATCGA TCCGAAGGTG ATCGGCAACA AGATGGTGTT TCCGGATTCG GCGACCGAGA AGCGGCTGTT CGTCATCACC GCGCGCGACG CCGCCACCCA GCGGGTGATC AACCGGCTGT GGACCAAGGT GAAGACCGGG ATGTAG
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Protein sequence | MRCSTGLQKL RFVAAMIGCA VLLLSPARAE QRVVNFYNWS NYIAPGVLDE FSRETGIKVI YDTFDGNETL ETRLLAGKSG YDVVVPTAYF LQRQIAANIF QKLDKAKLPN LGNAWDVVTK RLATYDPGNR FAANYMWGTT GIGYNVAAVR KILGEGAVID SWATVFKPEN LAKFTECGVH MLDSPDDILP AALTYLGLDP NSTKPADLEK AADLVGKIRP YVRKFHSSEY LNALATGEIC LVVAWSGDIM QARSRTAEAN NGVEIGYSIP KEGAQMFFDN LAIPADAKNV AEAHELINYL YRPDVAAKNS GFLSYANGNL ASQKLIDPKV IGNKMVFPDS ATEKRLFVIT ARDAATQRVI NRLWTKVKTG M
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