Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2039 |
Symbol | |
ID | 3973958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 2221235 |
End bp | 2222446 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637925148 |
Product | hypothetical protein |
Protein accession | YP_531913 |
Protein GI | 90423543 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.417724 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTGC GATCGCTGAG CGCCAACCGG CTGCGCTCGG CGCTGACGAT GGTCGGCATC GTCGTCGGCG TCGCGGCGGT GATCGCGGTA ATGGCGGTGG GCGAGGGCGC ACGGGCGGCG GTCGCGCAAC AAATTCGCGC GCTCGGTGCT AGCCTGATCA TCGTGACCTC CGGCGCCGGC TTCCAGAGCG GCCTGCGCCT CGGTGCGGGC ACCACGTCTA ACCTGTCGGA AGCCGATGCC GATGCCATTC AGAACGAGAT TCCTGAGGCC GTCACCGCCT CGCCGTTCCT GCGCACTCAG GCGCAAGTCC TCGGCAATGG AACCAACACC GCGACCTCGG TGTTCGGCGC GGACAACCGC TTCCTGACCG CTAGAGAATG GGATGTGGAA ATCGGCCGGC GGTTCGATGC CGAGGAAAGC CGCAGCGGGG AAACCGTCGC GCTGATCGGG CGGACCGTGG CCGGCTTGCT GTTCCCCGAG CAGAATCCGA TCGACGAACA GATCATCATC CGCGGCGTTC CGCTGCGGAT CATCGGCGTG CTCGCGGTCA AAGGCCAGTC GATGGTGGCG CAGGATCAGG ACGACCTGGT GATCGTGCCG ATCGACGTCG TGCGGCGGCG CATCATTGGC GGCAACCCGA CTGGCGACGG CAGCGTCGGA GCGATCCTGG TCAAGGCCGA AGACGGCGCG GTGCTGTCCG AAACCAGCCA ATCGGTCCGC GCCTTGCTGC GGCAACGCCA CCGGCTGGTC TCCGATCAGG AGGACGATTT CCAGCTTCGA AATCTCACCG AAATCATGAA TGCGGTGGCC TCCAGCGCCA ACGCGGTGTC GTTGCTGCTG GCCGCCGTTG CGGCGATTTC GCTGTTCGTC GGCGGGGTTG GAATCATGAA CATGATGCTG GTCGCGGTGA CCGAACGGAT CCCGGAAATA GGACTGCGAC TGGCGATCGG GGCGACACGA GCCAACATCC TGGCGCAGTT TCTCGCCGAG GCCGGCCTGC TGGCTGCGAC CGGCGGCGCG GTCGGCGTGG CCATCGGCTG GGGATTGGCG GCGGCGATCG CGGCGATCGC CGCGTGGCCG ACACTGATCG CTGCGCATCA TGTGCTGGGC GCGCTGTTGT TCTCCGCCCT GGTTGGCCTG GTGTTCGGGT TCGTGCCGGC GCTGCGGGCC TCCCGGCTCG ATCCGATCGT CGCGCTGAGA AGCCTGTCAT GA
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Protein sequence | MALRSLSANR LRSALTMVGI VVGVAAVIAV MAVGEGARAA VAQQIRALGA SLIIVTSGAG FQSGLRLGAG TTSNLSEADA DAIQNEIPEA VTASPFLRTQ AQVLGNGTNT ATSVFGADNR FLTAREWDVE IGRRFDAEES RSGETVALIG RTVAGLLFPE QNPIDEQIII RGVPLRIIGV LAVKGQSMVA QDQDDLVIVP IDVVRRRIIG GNPTGDGSVG AILVKAEDGA VLSETSQSVR ALLRQRHRLV SDQEDDFQLR NLTEIMNAVA SSANAVSLLL AAVAAISLFV GGVGIMNMML VAVTERIPEI GLRLAIGATR ANILAQFLAE AGLLAATGGA VGVAIGWGLA AAIAAIAAWP TLIAAHHVLG ALLFSALVGL VFGFVPALRA SRLDPIVALR SLS
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