Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1963 |
Symbol | |
ID | 3973636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 2134431 |
End bp | 2136374 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637925074 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_531839 |
Protein GI | 90423469 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGACG CCCGGAATCC GGGAGACGCC GCGGGTCGCC ATGCGCGACG TCTGCTGAAC CGGGGCGAAA TCCCGCCGCC GGGTCTGCTC AACACCACCG TCAGCCGCTC CTGGGAGCGC TGTCTGAAGT CCGGCCTCGA ACCGCTGGCC GGACCGGCGA CGCCCGACCC GGTGTCGCCG CCGCAGCTCA AACAGGCGCT GGAACAGCGG CGCGAATGGC TGCGCCAAGC CCGACCTATT GTCGAATACC TTTACAGCCA AGTCAGTGGC TCGGGCAGCA TGGTGATCCT GGCCGACGAC CAGGGCCTGC TGATCGAAGC GCTCGGCGAT GCGGAGTTTC TCAAGCGGGC CGAGCGGGTA GCGCTGCAGC CGGGCGCCTG CTGGCACGAG CAGGACCGCG GCACCAACGC CATCGGTACG GCGCTGGCCG AGCGGGCGCC GGTGGCGGTG CACGGCAGCG AGCACTTCCT CGACTGCAAC CGCTTCCTCA CCTGCACCGC CGCCCCGGTG ATGGGCAGCG ACGGCAAGCT GCTAGGCGTG ATCGACATTT CCGGCCACCA CAGCGCCCGC CACCCGCACA CGCTGGGGCT GGTGCAGATC GCCAGTCACA TGATCGAGAG CCGGGTGTTC GAGCTGTGGC ACGAAGGGGC GACGCGGTTG CGACTGCATC CGCAGGCCGA GGGCATCGGC ACCTTGGCCG ATGGGTTGCT GGCCCTCGAT GAGGACGGCC GCATCGTCGG CGCCAATCGG ACCGCGCTCA ACCTGCTGGG GCTGGCGGAC ATCGAGATCG GCCATGTCGG CATCGACGGC GTACTCGCGT TGGCCTCGGA CGGGCTGCTG CAACAGGCCC GGCGGCACCC CGGAGCCGTG CTCAACGCCG AGACGCGCTC TGGCCGGCGG CTGTTCGTCA GGGCCGAACC GGGACGATCG CTCGCGCCCA GCGCCCTGCC CCGCCGGACA GCCCCGGCGC GCGACGCGCT AGCCGAACTG GACACCGGCG ACGAGCGGAT GCGGCAATGC CTGGAGCGCG CCCGCAAGGT GGTGGGCAAG CCGATCCCGA TACTGCTGCA GGGCGAATCC GGGGTCGGCA AGGAGCTGGT GGCCGCCGCG ATCCACGCCT CCGGCCCGCG GCAGAAACGA GCCATGGTGG CGGTCAATTG CGCGGCGCTG CCGGAGCATC TGATCGAAGC CGAGCTGTTC GGCTATGCCC CCGGCGCCTT CACCGGAGCC CGCCGCGAGG GCTCTCCGGG GCGGATCCGC GAGGCCGATG GCGGCACGCT GTTTCTCGAC GAAATCGGCG ACATGCCGCT GTCGCTGCAG AGCCGGCTGT TGCGCGTGCT GCAGGAGCGC CAAGTGGTGC CGCTCGGCGG CGGCAAGCCG ACCACGGTCG ATTTCGCGCT GATCGCCGCC AGCCACCGGC CTTTGAAGCT CGAAGTCGAG CATGGCCGGT TTCGCGCCGA TCTCTACTAC CGCCTCAACG GCATCACCCT GACGCTGCCC TCGCTGCGAA CGCGTAGCGA CTTTCCCGTT CTGATGAGCC GCCTGCTCGA GCGCTTCGAG CCCGGCGCCG GATTGCTGGT CGAGCCGAGC GTCGTAGCGG CGCTGGCGGA GTATTCCTGG CCCGGCAATT TGCGCGAGCT GGCCAACGTG CTGCGCTTCG CCTCGGCGCT GCTGGACCCC GGCGAGACGG TGATCGGCTG GCAGCATCTG CCGGAGGATC TGGTCGACGA GCTGCGGCGA CCACAGCGGG CGCGGCCGGA CAACTGCGCG GGCTTGCCGT CGCTGCGGGC GGCCTCGGAT TCGCTGATCG AGCGCGCGCT GCACAACAGC GCCGGCAACC TCTCCGAAGC CGCCCGCCGG CTCGGCATCA GCCGCACCAC GCTCTATCGC CGCATCGGCG GCGACCACCG CCGCAGCGTC AGGGTCAGCC GTGAGGTGCC GTGA
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Protein sequence | MTDARNPGDA AGRHARRLLN RGEIPPPGLL NTTVSRSWER CLKSGLEPLA GPATPDPVSP PQLKQALEQR REWLRQARPI VEYLYSQVSG SGSMVILADD QGLLIEALGD AEFLKRAERV ALQPGACWHE QDRGTNAIGT ALAERAPVAV HGSEHFLDCN RFLTCTAAPV MGSDGKLLGV IDISGHHSAR HPHTLGLVQI ASHMIESRVF ELWHEGATRL RLHPQAEGIG TLADGLLALD EDGRIVGANR TALNLLGLAD IEIGHVGIDG VLALASDGLL QQARRHPGAV LNAETRSGRR LFVRAEPGRS LAPSALPRRT APARDALAEL DTGDERMRQC LERARKVVGK PIPILLQGES GVGKELVAAA IHASGPRQKR AMVAVNCAAL PEHLIEAELF GYAPGAFTGA RREGSPGRIR EADGGTLFLD EIGDMPLSLQ SRLLRVLQER QVVPLGGGKP TTVDFALIAA SHRPLKLEVE HGRFRADLYY RLNGITLTLP SLRTRSDFPV LMSRLLERFE PGAGLLVEPS VVAALAEYSW PGNLRELANV LRFASALLDP GETVIGWQHL PEDLVDELRR PQRARPDNCA GLPSLRAASD SLIERALHNS AGNLSEAARR LGISRTTLYR RIGGDHRRSV RVSREVP
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