| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1824 |
|---|
| Symbol | |
|---|
| ID | 3971819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1974127 |
|---|
| End bp | 1977969 |
|---|
| Gene Length | 3843 bp |
|---|
| Protein Length | 1280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637924937 |
|---|
| Product | gene transfer agent (GTA) orfg15 |
|---|
| Protein accession | YP_531702 |
|---|
| Protein GI | 90423332 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.51325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.391339 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCGC TCGTGCTCTC GATCGCCGGC GGCGCCGGCG GCGCGCTGTT CGGCCCGGTC
GGCGCCATCG CCGGCCGGAT CGCCGGCGCG CTGGTCGGCA ATGCCATCGA TCAATCGGTG
TTCGGCAGCG ACCGCCGGGT CGAAGGGCCT CGGCTCGCCG ATCTCGAGGT GATGGCCTCG
ACCGAGGGCG CGCCGATCCC GCGGGTCTAC GGCCGGGCGC GGTTGTCGGG CCAGGTGATC
TGGGCCACCG ACCTCGAGGA GGTGGTCTCC AGCGACACCA GTTCCTCCAG CGGCAAGGGG
ATGAGCGGCC CGAGCACGAC GACCACGACT TACAGTTACT TCGCCAATTT CGCGGTCGGG
CTGTGCGAGG GGGTGATCGG CCGGGTGGCG CGGATCTGGG CCGACGGCAA GCCGCTCGAC
CTCGCCCACC TCAACGTCCG GGTGCATCGC GGCACCGAGC AGCAGGGCCC GGACGAACTG
ATCGTCGCCA AAGAGGGCGC CGCCAACGCG CCGGCCTATC GCGGGCTGGC CTATGTGGTG
TTCGAGCGGC TGCCGCTGAA GGATTTCGGC AACCGGATTC CGCAATTGTC GTTCGAGATC
GTCCGGCCGA TCGGCGCGCT CGAACAGATG GTCCGCGCCA TGACGCTGAT CCCGGGCACC
ACCGAATTCG GTTACGAGCC CTCGGCGATG GTGCGCAGCG CCGGGCTCGG CGCCTCGGCG
CAGGAAAATC GCCACGTCAG CCATGCGGTC TGCGACGTCG CCGCCGCGCT CGACGATCTG
CAGGGCATCT GCCCGAACCT CGAGCGCGTG GCGCTGGTGG TGGCGTGGTT CGGCTCCGAT
CTGCGCGCCG GGCAATGTCT GGTGCGGCCT GGCGTCGAGA ATGCCAGCAA ACGCACCAGC
CCGATGATCT GGTCGGTCGA TGGCGTGAGC CGCGCCGCCG CGCCGGTGGT GTCGCAGGTC
AACGGCCGTC CGGCCTATGG CGGCACGCCG TCCGACGACA GCGTGGTGCA CCTGATCCGC
GAATTGAAAG CGCGCGGCTT GAAGGTGACG TTCTATCCGT TCGTGATGAT GGACATCCCG
GCCGGCAACG GCTTGCCGGA TCCGTGGAGC GGGGCGGCGT CGCAGCCGCC TTATCCGTGG
CGCGGCCGCA TCACCTGCGA TCCGGCGCCG GGCCGGCCGG GCTCGCCGCA GGGCACCGCC
GCGGCGGCCA GCCAGGTGCA GCATTTCTTC ACCGGAGGGA CCTGGAATTA TCGCCGCATG
GTGCTGCACT ACGCGCGTCT CGCCGCCTCG GCGGGCGGCG TCGACGCGTT CCTGATCGGC
TCGGAATTGA AGGCGCTGAC CCGGGTGCGC TCCGGCGCCG GGGTCTATCC CGCGGTGCAG
GCGCTGCTGT CGCTCGCCGC CGAGGTCAAG GCGATCGTCG GCGGAACGCT GGTGACCTAC
GGCGCCGACT GGACCGAATA CGGCGCCGAC GCGGTGACGC CCGACGCCTC CGAATTGCGG
TTTCCGCTCG ATCCCTTATG GGCGAGCCCG GCGATCGGCG CGGTGGGGAT CGATTACTAC
GCGCCGTTGT CGGACTGGCG CGACGGCGCC GCGCATCGCG ACGCCGCGTT CGCGGCGTCG
ATCTACGACC GCTCCTATCT CGCCGGCAAT GTCCGGGGCG GCGAGGGCTA CGACTGGTAC
TACGCGGATG ACGCCGCGCG TGCTGCACAA GCGAGGGCGC CGATCACCGA CGGCCGCGGC
AAGCCGTGGG CGTTTCGGGT CAAGGACCTG TGGGCGTGGT GGAGCAATGC GCATTACGAG
CGCACCGGCG GCGGCGAAGT GTCGGCGCCG ACGGCGTGGG TTCCGCGCAG CAAGCCGATC
TGGATCACCG AGGTCGGCTG CCCCGCGGTC GACAAGGGCG CCAACCAGCC GAGCGTGTTT
CCGGACCCGA AATCCAGCGA GAATTTCGTG CCGTATTTTT CCTCGGGCGA GCGCGACGAC
CTGATGCAGC GCCGCTATCT GGAAGCGCTG ATCGCCGCGT TCGATCCGGC GTTCGGCGCC
GGCGAGGCGC AGAACCCGGT GTCGCCGATC TATGGCGGGC GGATGGTCGA GGTCTCGGCG
ATCCATCTGT GGACCTGGGA TGCGCGGCCC TATCCGGTGT TTCCGGCGGC CGACGATGTG
TGGGGCGACG CCGCGAACTG GTCGACCGGG CATTGGCTGT CCGGCCGGCT CGGCGGCGCG
CCGCTCGACG CGCTGCTGGC GGCGTTGCTG CGCGATGCCG GGGTGACCGG GGTCGATAGT
TCGGCGCTGC GCGAGATCTG CGACGGCTAT GTGGTCGACC GGCCGATGTC GCCGCGGGCG
ATGATCGAGC CGCTCGCCGC GGCTTACGCA TTCGATGCCC ATGCCGCAGA GGGCGTATTG
CGCTTCGTGC CGCGCGGCGG GTTGCCGGTC GCCGAACTCG GCGAGGACGA TCTGGTGCTG
CCCGACAACG GCGCGCCGAG CCGGCTGACC CGGGCGCAGG AAACCGAACT GCCGCGCGAG
GTGGCGCTCG GTTTCAGCGA CGCGCTGGCG GATTACCGCC GCTCCGCGGT GACCTCGCGG
CGGCTGGCCG GCGGCGCCAA CCGCATGGTG CAGTCCGACC TCGCGGTGAT CAGCAACGCC
GCCGCCGCGA AACGCCGCGC CGAAATCTTT CTGCAGGATC TGTGGGCCGG GCGGGAGACC
GCGCAGTTTG CGCTCGGGCT CGACCGGCTG GCGCTGGCGC CCGGCGATGT CGTGGCGCTG
ACGCTCGCAG GACGCCGTAG GCTGTTCGAG ATCGACGAAT TGGTTGATAC CACGGCGCGG
CAGATCAAGG CCCGCAGCAT CGATCCCGAG GTGTTCGCCG CACCGCTGCC GGCGGTTTCG
CCGCGGCGGC CGACGATTCC GCCGGCGCTG GGGCCGGTGC TGGCGCTGCC GCTCGATCTG
CCCTCGCTCG ACGCCGCGAC GCCGGCGACG CTGACCCGGC TCGCGGTGTG CGCCAATCCG
TGGCCGGGGG CGGTGACGGT GTGGTCGTCG TCGGACGGCG CGAGCTACAC GCCGATCGCG
GTCGCGGCGG CGCCGGCGAC CGTCGGCGAA ACGCTCGACC CGCTGCCGGC GGCGGTGCCG
GCCCGCTGGG ATCGCGCCGG CCGCTTCCGG GTGCGGCTCG CCAGCGGCTC GCTGAGTTCG
GCGAGCGACG CCCGGGTGCT GGAGGGCGCC AATGCGGCCG CGCTGCAGAC CCCGAGCGGC
GATTGGGAGA TCGTGCAATT CGCCAACGCC GAACTGGTCG ACGGCAACAC CTATCTGTTG
TCGCGGCTGT TGCGCGGCCA GCTCGGCAGC GAACACGCGA TCGCCGATCC GCTGCCGGCG
GGGGCGGCCT TCGTGCTGTT GAACGAGCAT CTGGTGCCGA TCGCGCGCGG GCTCGATGCG
CTCGGTCGGC CGATGCAACT GCGGCTCGCC GCCAGCGGCC GCAGCCATGA CGACGCGATG
GCGGTGGCGC TGACGGTGAC GCCCGGCGCC ACCGCGCTGC GGCCGTTGGC GCCGGTGCAA
TTGCGCGCGT CGCGCAAGGC CGACGGCATC CACATTTCCT GGATCCGGCG CACAAGGCTC
GACGGCGACG GCTGGAACAA CGAGGTGCCG CTCGGCGAGG AGATCGAGGC CTACCGGCTG
GAGATTCTGT CCGCTGCCGC GGTGCTTCGC ACGATCCCCT GCAACACGCC GCAGGCGATC
TATCCCACAG CCTCCGAGCT CGCCGATTTC GGCGCGGCGC AATCCTCGTT GCAGATCCGC
GTCGCGCAAC TCTCCAGCAC CGTCGGCGCC GGCTTTGCCA CCGAGCGCAG GCTCGCCGTG
TAA
|
|---|
| Protein sequence | MAALVLSIAG GAGGALFGPV GAIAGRIAGA LVGNAIDQSV FGSDRRVEGP RLADLEVMAS
TEGAPIPRVY GRARLSGQVI WATDLEEVVS SDTSSSSGKG MSGPSTTTTT YSYFANFAVG
LCEGVIGRVA RIWADGKPLD LAHLNVRVHR GTEQQGPDEL IVAKEGAANA PAYRGLAYVV
FERLPLKDFG NRIPQLSFEI VRPIGALEQM VRAMTLIPGT TEFGYEPSAM VRSAGLGASA
QENRHVSHAV CDVAAALDDL QGICPNLERV ALVVAWFGSD LRAGQCLVRP GVENASKRTS
PMIWSVDGVS RAAAPVVSQV NGRPAYGGTP SDDSVVHLIR ELKARGLKVT FYPFVMMDIP
AGNGLPDPWS GAASQPPYPW RGRITCDPAP GRPGSPQGTA AAASQVQHFF TGGTWNYRRM
VLHYARLAAS AGGVDAFLIG SELKALTRVR SGAGVYPAVQ ALLSLAAEVK AIVGGTLVTY
GADWTEYGAD AVTPDASELR FPLDPLWASP AIGAVGIDYY APLSDWRDGA AHRDAAFAAS
IYDRSYLAGN VRGGEGYDWY YADDAARAAQ ARAPITDGRG KPWAFRVKDL WAWWSNAHYE
RTGGGEVSAP TAWVPRSKPI WITEVGCPAV DKGANQPSVF PDPKSSENFV PYFSSGERDD
LMQRRYLEAL IAAFDPAFGA GEAQNPVSPI YGGRMVEVSA IHLWTWDARP YPVFPAADDV
WGDAANWSTG HWLSGRLGGA PLDALLAALL RDAGVTGVDS SALREICDGY VVDRPMSPRA
MIEPLAAAYA FDAHAAEGVL RFVPRGGLPV AELGEDDLVL PDNGAPSRLT RAQETELPRE
VALGFSDALA DYRRSAVTSR RLAGGANRMV QSDLAVISNA AAAKRRAEIF LQDLWAGRET
AQFALGLDRL ALAPGDVVAL TLAGRRRLFE IDELVDTTAR QIKARSIDPE VFAAPLPAVS
PRRPTIPPAL GPVLALPLDL PSLDAATPAT LTRLAVCANP WPGAVTVWSS SDGASYTPIA
VAAAPATVGE TLDPLPAAVP ARWDRAGRFR VRLASGSLSS ASDARVLEGA NAAALQTPSG
DWEIVQFANA ELVDGNTYLL SRLLRGQLGS EHAIADPLPA GAAFVLLNEH LVPIARGLDA
LGRPMQLRLA ASGRSHDDAM AVALTVTPGA TALRPLAPVQ LRASRKADGI HISWIRRTRL
DGDGWNNEVP LGEEIEAYRL EILSAAAVLR TIPCNTPQAI YPTASELADF GAAQSSLQIR
VAQLSSTVGA GFATERRLAV
|
|---|
| |