| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1571 |
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| Symbol | alaS |
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| ID | 3973129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1704258 |
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| End bp | 1706930 |
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| Gene Length | 2673 bp |
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| Protein Length | 890 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637924687 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_531452 |
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| Protein GI | 90423082 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.673823 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000202808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCGGCG TAAACGAAAT CAGATCGGCA TTTCTGAATT ATTTCGGCAA GGATGGGCAC
GAGATCGTGC CGTCGTCCCC GTTGGTGCCG CGCAACGATC CGACCTTGAT GTTCACCAAT
GCCGGCATGG TGCAGTTCAA GAACGTCTTC ACCGGGGTGG AGAAGCGCGC CAACCACCGC
GCCACCACCT CGCAGAAATG CGTCCGCGCC GGCGGCAAGC ACAACGACCT CGACAATGTC
GGCTACACCG CGCGGCATCA CACCTTCTTC GAGATGTTGG GTAATTTTTC GTTCGGCGAT
TACTTCAAAG ACCACGCCAT CGAACTCGCC TGGAACCTGA TCACCAAGGA ATTCGGCCTG
CCCAAGGAGC GGCTGCTGGT CACGGTGTTC TCCGAGGACG ACGAGGCGTT CGCGCTGTGG
AAGAAGATCG CCGGCTTGCC GGACTCCAAG ATCATCCGGA TCCCGACCTC GGACAATTTC
TGGCAGATGG GCGACACCGG CCCCTGCGGG CCGTGTTCGG AAATCTTCTT TGACCACGGC
GATCACATTC CTGGCGGCCC GCCCGGCTCG CCCGAAGAAG ACGGCGACCG CTTCATCGAG
ATCTGGAATC TGGTGTTCAT GCAGTTCGAC CAGATCGCGC CGGGGCAACG CAACCCGCTG
CCGAAGCCGT CGATCGACAC CGGGATGGGC TTGGAGCGCA TCGCCGCGGT GCTGCAGGGC
AAGCACGACA ATTACGACAT CGATCTGTTC CAGGCGCTGA TCCGCGCCAT CGCCGAACTG
ACCGGCGCCG ATCCGAAGGG CGAGCACAAG GCCTCGCTGC GGGTGATCGC CGATCACTTG
CGCGCCTCGT CGTTCCTGAT CGCCGACGGC GTGCTGCCGT CGAACGAAGG CCGCGGCTAC
GTGCTGCGCC GGATCATGCG GCGCGCGATG CGCCACGGCC AATTGCTCGG TGCCACCGAG
CCGCTGATGT GGCGCCTGGT GTGGGCCTTG GTGCGCGAGA TGGGGCAGGC CTATCCGGAG
CTGGTGCGCG CCGAGCCGAT GATCGAGGAG ACGCTGCGGC TGGAAGAAAC CCGGTTTCGC
AAGACGCTGG ATCGCGGCCT GATCATTCTC GACGAGAAGA GCAGCACGCT GAAGAAAGGC
GACATGTTCG ACGGCGAGAC CGCGTTCACG CTGTACGACA CCTATGGCTT TCCGCTGGAT
CTCACCCAGG ACGCGCTGCG CAACCGCGGC ATCAGCGTCG ACATCGCCTC GTTCACCGAT
GCGATGGACC GCCAGCGCGC CAAGGCGCGG GCGTCGTGGG CGGGGTCGGG CGACACCGCT
ACCGAAACCG TGTGGTTCGG CCTGCGCGAA CAGCTCGGCG CCACTGAATT CCTCGGCTAC
GAGACCGAGA CCGCCGAAGG CGTGGTCGCG GCCTTGGTGA AGGACGGCCA AAAGGTCGAT
CAGCTCAAGG TCGGCGAGGC CGGCGCGATC GTGCTCAACC AAACCCCGTT CTACGCCGAA
TCCGGCGGCC AGGTCGGCGA CACCGGGGTG ATGACCGGCG AGGGCGTGCG GTTCCGCGTC
ACCGAGACCC AGAAGAAGGC GCACGATCTG TTCGTGCATC TCGGCACCGT GGAGCAGGGC
ACGCTGACGC CTGACACCGC GCTGTTGCTC GAGGTCGATC ACACCCGCCG CTCCTCGATC
CGCGCCAATC ACTCCGCCAC CCATTTGTTG CACGAGGCGC TGCGCCAGGT GCTCGGCGAT
CACATCGCGC AGAAGGGCTC GCTGGTGGCC GAGGATCGAC TGCGGTTCGA TTTCGTGCAT
CAGAAGCCGA TCAGCGCCGA CGAATTGCGC CGGGTCGAGG ACATCGCCAA CGAGGTGGTG
CTGGAGAACG ACGAAGTCAC CACACGGCTG ATGGCGGTTG ACGACGCCCG CGAGGCCGGC
GCGCGTGCGC TGTTCGGCGA GAAATACGGC GACGAAGTCC GTGTCGTGAC CATGGGCAAG
TCGGCGCGCC AGCACGGCAG CAACGCGCTC GGCTGGTCGG TGGAATTGTG CGGCGGCACC
CATGTGCGGC GCACCGGCGA TATCGGGCTG ATCTCGATCA CCGGCGAAAG CGCGGTGGCC
TCCGGGGTGC GCCGGATCGA GGCGTTGACC GGCCGCTTCG CGCGGCAGAG CGCCAACGCG
GCGATCGACA CCGCGAAAGC CACCGCCGCC GAACTGCGCA CCTCGGTCGA CGACATGCCG
GCGCGGGTCG CGGCCCTGAT GGACGAGCGC AAGAAGCTCG AGCGCGAATT GGCCGAGGCC
CGGAAGAAGC TGGCGATGGG CGGCGGTGGT GCTGCGGCCG CCAATGGCGA GGCCGGCGTC
CGCGAGGTCG GCGGCGTCAA GCTGTTGGCG CGCGCGGTCG AGGGCATCGA GATCAAGGAC
CTGAAGAGCC TGGTCGATCA GGGCAAGAAG CAGCTCGGCT CCGGCGTGAT CGCGCTGGTC
GCCACCAGCG CCGACGGCAA GGGCTCGATC GTGGTCGGCG TCACGCCGGA TCTGGTCGCC
CGGTTCTCTG CGGTCGATCT GGTACGCAAG GCCTCGGAAG TGCTGGGCGG CAAGGGCGGC
GGCGGCAAGC CCGATATGGC GCAGGCCGGC GGCCCGGACG GCTCCAAGGC GCAGGCCGCG
CTCGACGCCA TTGCCGAAGC GATCGGCGGA TAA
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| Protein sequence | MSGVNEIRSA FLNYFGKDGH EIVPSSPLVP RNDPTLMFTN AGMVQFKNVF TGVEKRANHR
ATTSQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKDHAIELA WNLITKEFGL
PKERLLVTVF SEDDEAFALW KKIAGLPDSK IIRIPTSDNF WQMGDTGPCG PCSEIFFDHG
DHIPGGPPGS PEEDGDRFIE IWNLVFMQFD QIAPGQRNPL PKPSIDTGMG LERIAAVLQG
KHDNYDIDLF QALIRAIAEL TGADPKGEHK ASLRVIADHL RASSFLIADG VLPSNEGRGY
VLRRIMRRAM RHGQLLGATE PLMWRLVWAL VREMGQAYPE LVRAEPMIEE TLRLEETRFR
KTLDRGLIIL DEKSSTLKKG DMFDGETAFT LYDTYGFPLD LTQDALRNRG ISVDIASFTD
AMDRQRAKAR ASWAGSGDTA TETVWFGLRE QLGATEFLGY ETETAEGVVA ALVKDGQKVD
QLKVGEAGAI VLNQTPFYAE SGGQVGDTGV MTGEGVRFRV TETQKKAHDL FVHLGTVEQG
TLTPDTALLL EVDHTRRSSI RANHSATHLL HEALRQVLGD HIAQKGSLVA EDRLRFDFVH
QKPISADELR RVEDIANEVV LENDEVTTRL MAVDDAREAG ARALFGEKYG DEVRVVTMGK
SARQHGSNAL GWSVELCGGT HVRRTGDIGL ISITGESAVA SGVRRIEALT GRFARQSANA
AIDTAKATAA ELRTSVDDMP ARVAALMDER KKLERELAEA RKKLAMGGGG AAAANGEAGV
REVGGVKLLA RAVEGIEIKD LKSLVDQGKK QLGSGVIALV ATSADGKGSI VVGVTPDLVA
RFSAVDLVRK ASEVLGGKGG GGKPDMAQAG GPDGSKAQAA LDAIAEAIGG
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