| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1485 |
|---|
| Symbol | |
|---|
| ID | 3972269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1618278 |
|---|
| End bp | 1620077 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637924600 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_531366 |
|---|
| Protein GI | 90422996 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1749] Flagellar hook protein FlgE |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATCT TCGGCGCTCT CACCACCTCC GTCGCGGGGC TCAGGACCCA GTCTTACGCG
CTAGAGAATA TCTCCGGCAA CATCGCCAAC TCGCAGACCA CCGCGTTCAA GCGGATCGAC
ACCTCGTTCC TCGACCTCAT TCCGCAGACC GGCAACGACC AGCAGCTGGC CGGCTCGGTG
ACGGCGAAAT CCCGCAGCAC CAACACCATC CAGGGCTCGG TGCAGTCGGC CTCGGTCTCC
ACCTACATGG CGATCAACGG CGACGGCTTC TTCGCGGTGC AGAAGCCGGG CTCGTTCAGC
GACAACAACC CGGTGTTCAC CGGCGTCAAC AACTACACAA GGCGCGGCGA CTTCTCGCTC
GACAAGAACG GCTATCTGGT CAACGGCGCC GGCTACTATC TGCAAGGCGT GACGATCGAC
AGAACCACCG GCAACCCGTC CGGCGGCGCG CCGGCGATCC TGAAATTTCA GAACGACTTT
CTGCCGTCGC AGCAGACCAC CAAGATCAGC TACCGGGCCA ACCTCGCGAG TTATCCCTTG
ACCAGCAAGC ACGACACCTC AGTGCCGGGC TCGGAATTGC TGCGGCCGGC TGACTTCTCG
GTCAACCCGC AAGTCAACGG CACCCAGCCG CCGCCGTTCG GCGACAACAC CAAGTCCGGG
CTGCAGGTCA ACAGCAAGAA CGCCACCGCG ATCACCGGCG CCACCAAGCT CAGCGGCGCG
TCGCCCTCGG ACTCCACCAA CGTCAACTTC GCGGTCGGCG ATACCGTCAA GGTGAACGGC
ACCGACATCA TCGTCACCGC CTCCGGCGGC CTCGACGACG GCACCCACAT CCCGGTGGAC
AGCACGATCA CCAACCTGCT CGGCAAGATC GACGCTCTGT CCGGCAACAA CGTCACGCCG
TCCACCGTCA CCGGCGGCGG CGTGGTGCTG CACACCGGCA CCGCCGCCGA CCTGTCGATC
GTCTCGACCA GCGCCGGGTT CGCTTCGCTG GGCCTCACCA GTCCGGTCAC CGTGGTGCGC
ACCGGCGGCG GCTCGGTCGG TACCGGCAAA GTGGTCGGCA GCGACAACCA GACCTTTCTC
GACGAATCGA TTTCCGGCGG CGCCACCACC GCCTATGACG GCAACGGCGC CCCGGTGCCG
GTGCAATTCC GCTGGGCGAA AACCGACTCC GCGACGCTGG GTGTGGGCCA TAACGATACC
TGGAACCTGT TCTACCAGAC CAACCCCGCC GCCACCGGCG CCAACACCAG CTGGGTCAAT
GTCGGCACCA ACTTCTCGTT CGGCAGCAAC GGCGAAATGA ACCCGGTGAT CGGGGCGCTG
ACGCTGACCA ATCTGACCGT GAGCGGCGTC TCGCTCGGCA ACGTCACGAT GTCGTTCGGC
ACCGGCGGCC TGACCCAGTT CGCCGACACC AACGGCAACG TCCAGGTCAA CCAGATGCAA
CAGGACGGCT ACGCCGCAGG TCAGCTGACC AGCGTCTCGG TCAGCAACGA AGGCCGCGTG
GTCGGCGCCT ATTCCAACGG CCGCAACATC GATCTCGCCG AAGTCAGCGT CGCCACCTTC
AACGGCGCCA ACTTCCTCAA GCGTCTCGAC GGCGGCGCGT TCGAGGTCAC CAACGAATCC
GGCGCGGCGC TGTTCGGCAA GGGCGGCAGC ATCTCCGGCT CATCGCTGGA AGCCTCCAAC
ACGGATATCG CCGACGAATT CACCAAGCTG ATCGTCACCC AGCAGGCCTA TTCGGCCAAT
ACCAAGGTGA TCACCACGGC CAATACCATG GTCTCGGATC TGTTGAACGT GATCCGCTAA
|
|---|
| Protein sequence | MGIFGALTTS VAGLRTQSYA LENISGNIAN SQTTAFKRID TSFLDLIPQT GNDQQLAGSV
TAKSRSTNTI QGSVQSASVS TYMAINGDGF FAVQKPGSFS DNNPVFTGVN NYTRRGDFSL
DKNGYLVNGA GYYLQGVTID RTTGNPSGGA PAILKFQNDF LPSQQTTKIS YRANLASYPL
TSKHDTSVPG SELLRPADFS VNPQVNGTQP PPFGDNTKSG LQVNSKNATA ITGATKLSGA
SPSDSTNVNF AVGDTVKVNG TDIIVTASGG LDDGTHIPVD STITNLLGKI DALSGNNVTP
STVTGGGVVL HTGTAADLSI VSTSAGFASL GLTSPVTVVR TGGGSVGTGK VVGSDNQTFL
DESISGGATT AYDGNGAPVP VQFRWAKTDS ATLGVGHNDT WNLFYQTNPA ATGANTSWVN
VGTNFSFGSN GEMNPVIGAL TLTNLTVSGV SLGNVTMSFG TGGLTQFADT NGNVQVNQMQ
QDGYAAGQLT SVSVSNEGRV VGAYSNGRNI DLAEVSVATF NGANFLKRLD GGAFEVTNES
GAALFGKGGS ISGSSLEASN TDIADEFTKL IVTQQAYSAN TKVITTANTM VSDLLNVIR
|
|---|
| |