| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1464 |
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| Symbol | |
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| ID | 3973825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1597276 |
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| End bp | 1599828 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637924579 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_531345 |
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| Protein GI | 90422975 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0597049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCAGG CTGTTCACCC GCGATCGCGC CCCGCGATCC TCACCGACGC AGCAGCCGCA
TCCCGAGACG ACGCCGTGGA CATGTCTTCG CAAAGCTTCT CAGCCGACGC ACGTCCCCGG
CGCTATCTGG TTACCGTGGC GGCGGCGGTG ATCGGAACGC TGATTTCGCT GGCGGCGTTC
GTCGCGATCT CGAAATGGGA GCAGCGGATC GCCGATCTGA AGCTGCACGA GATCGCCGGC
AACTACCTGC AGGTGCTGAA TTCGGATCTG GAACGCGCCA CCGAGGTGCT GTATCCGCTG
CGCGCCTATT TCGACAACAG CGACGACGTC AGCCGCCGCG AATTCCAGGC GTTTTCCAAG
GATCTGCGCA AGCGGCTGAA CGGCCTGCGC AACACCGGCT GGGCGCCGCG CGTCGGCCGG
GCGCAACGCC AGCGGTTCGA GCAATGGGTT CGCGACCACG GCTTTCCCGG TTTCGAGATC
TGGCAGCGCG ACGCCGACGG CCACCGGGTG CGGGCGCCGC AACGCGACGA GTATTTCCCG
GTGCTGTATG CCGAGAACCA AAGCCAACAG GTGCTCGGCT TCGACATGGC CTCGCCGCCG
GCGCGGGCCG CCGCGATCGC CCGGGCGGGC GCCACCGGGG AGATGGCGGC GACGCCGCCG
ATCGCCACGC TGACCAAGTC GGAGCCCGGC GACTTCATCG TGTTCATGCC GGTCTATCGC
CGAGAGGCGC CGCGATCGGA GACGCCGCGG ATCCCGCAGG GCTATCTGTG CGGAATATTC
GAGACCGGGC CGACCATCGC CGGCATCCTC GGCGCCCGGC CGCTGCCGTC CGGCGTCGAC
GTCTATTTCT TCGATCCCAC CGAGACCGGC GCCAAACGCA GCATCCTGTG GCATCCGTCG
CGGACCCGCA CCGCGCCGGC GCAGCAGCCC GACGAAGCCG CGATGCGCGC CGGGCTGCAT
GCCTCCGGCA TCATCAGGGT CGCCGACCAG CAATGGGGCG TGCTGTTCGC CCCCGCCGGC
GAAGGCGCCA TCGCGCCGTC CAACGCCATC GCGATCGCGA TCGCGGTGCT GATCGCCGGA
TTGCTGATGA CCGCGGCGAT CGTCGGCTAT CTGCTGCGCT CGCTGCAGCG CACGCTGCGG
CTGGAATTTC TCACCGAGAG CCTGCGCGGC GCCACCGCGG AGTTGCAGCG CGAGAGCGCC
AAGGTGGCCC GGCTCGCCAG CCTCGATGCC ATGACCGGGC TCGCCAACCG CGTGAGCTTC
CTGGCGCAGC TGTCGACCGC CTTCGCGGCG GCGCGGCAGC ACGACGGCCG CTTCGCGGTG
GTCTGTCTCG ACCTCGATCA TTTCAAGGAC GTCAACGACA CGCTCGGCCA TCCGATCGGC
GACCGATTGT TGCAGATCGC GGCGCGCCGG CTGATCGGGA TGCTGAAGGC CGGCGACCTG
ATCGCCCGGC TCGGCGGCGA CGAATTCGCC ATCCTGCTCG CCGAGGTCTG CGACCGCGAC
GCCATCGCCG CGATTGCGGC GCGGCTGATC GAGGGCCTCG CCGAGCGCTA CGATCTCGAC
GGCAACGCCG CGCACGTCTC CGCCAGCCTC GGCATTTCGA TCTACGGCCC GGCCACCGCC
TCGGCCGAGG CGATGATGAT CGAGGCCGAT CTGGCGCTGT ACAGCGCCAA GAGCGAGGGC
CGCAACGGCT ACGTGTTCCA TTGCGCCGCG CTCGACAGCG CGGTGCGCGA GCGGGTTCGC
GTCAACGACG AATTGCAGGC GGCGCTGCGC AACGGCGAAC TGACGTTGCA CTACCAGCCG
CAGGTCGAGG TGCCGAGCGG CCGCATCAAC GGCCTGGAGG CGCTGGTGCG CTGGAATCAC
CCGAGCCGCG GCCTGTTGTA TCCCGGCGCC TTCATTCCGG TCGCCGAGAC CACCGGCGCC
ATCGTCGGGG TCGGCCGCTG GGTGCTCGAG GAGGCGTGCC GGCAGATCAA GCGCTGGCAG
GCCGAGGGCC TGACGCCGCC GCGGGTCGCG GTCAACATTT CGGCGGCGCA GTTCAAGGGC
GCGGTGCCGC TCGATCGGCA ATTGCGCGAC ACCCTGGCGC AATACGACGT CGCTCCCGAA
CTGATCGAGA TCGAGCTCAC CGAATTCGCG CTGCTGGAAT CCACCAAGGC CAACAGCGAC
ACCATCCGAA GGGTGCGCGA ACTCGGCATC AGCGTGGCGA TCGACGATTT CGGCACCGGC
TACTCGTCGT TGGAGTACCT GCGCACCTAC CGGGTCAACC GGCTGAAGAT CCCGCAGCAA
TTCATGACCG AGGTGGCGAT CGAATCCGGC GACGCCGCGA TCGTGCGCGC CGCCTTGGTG
CTGGCGCGCG AGCTCGGCAT GGACGCCATC GCCGAGGGCG TCGAGACTCC GGAGCAGCTC
GCCTTCCTGC TCAGCGCCGG CTGCCGCAAC GTGCAGGGTT ATTATTTCAG CCGCCCGATA
CCGGCCGAAG CGTTGCGGCC GCTGCTCGCC TGCGGCGTGA TCCAACGCGC GCCGGCGCCG
CCGGTATCTA AGTCTGCGCG ACTGGTCGGC TGA
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| Protein sequence | MRQAVHPRSR PAILTDAAAA SRDDAVDMSS QSFSADARPR RYLVTVAAAV IGTLISLAAF
VAISKWEQRI ADLKLHEIAG NYLQVLNSDL ERATEVLYPL RAYFDNSDDV SRREFQAFSK
DLRKRLNGLR NTGWAPRVGR AQRQRFEQWV RDHGFPGFEI WQRDADGHRV RAPQRDEYFP
VLYAENQSQQ VLGFDMASPP ARAAAIARAG ATGEMAATPP IATLTKSEPG DFIVFMPVYR
REAPRSETPR IPQGYLCGIF ETGPTIAGIL GARPLPSGVD VYFFDPTETG AKRSILWHPS
RTRTAPAQQP DEAAMRAGLH ASGIIRVADQ QWGVLFAPAG EGAIAPSNAI AIAIAVLIAG
LLMTAAIVGY LLRSLQRTLR LEFLTESLRG ATAELQRESA KVARLASLDA MTGLANRVSF
LAQLSTAFAA ARQHDGRFAV VCLDLDHFKD VNDTLGHPIG DRLLQIAARR LIGMLKAGDL
IARLGGDEFA ILLAEVCDRD AIAAIAARLI EGLAERYDLD GNAAHVSASL GISIYGPATA
SAEAMMIEAD LALYSAKSEG RNGYVFHCAA LDSAVRERVR VNDELQAALR NGELTLHYQP
QVEVPSGRIN GLEALVRWNH PSRGLLYPGA FIPVAETTGA IVGVGRWVLE EACRQIKRWQ
AEGLTPPRVA VNISAAQFKG AVPLDRQLRD TLAQYDVAPE LIEIELTEFA LLESTKANSD
TIRRVRELGI SVAIDDFGTG YSSLEYLRTY RVNRLKIPQQ FMTEVAIESG DAAIVRAALV
LARELGMDAI AEGVETPEQL AFLLSAGCRN VQGYYFSRPI PAEALRPLLA CGVIQRAPAP
PVSKSARLVG
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