Gene RPC_1378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1378 
Symbol 
ID3972474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1502802 
End bp1504244 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content65% 
IMG OID637924493 
ProductXRE family transcriptional regulator 
Protein accessionYP_531259 
Protein GI90422889 
COG category[R] General function prediction only 
COG ID[COG3800] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.151662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.880216 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGGAG ACTCTGGAAA AAAGCTGTTC GTCGGCCCCA GGTTCCGGCG GATCCGTCAG 
CAACTCGGCC TGTCGCAGAC CCAGATGGCC GAGGGCCTCG GCATTTCTCC AAGTTATATC
AACCTGATAG AGCGTAACCA GCGGCCCGTG ACGGCGCAGA TCCTGCTCCG GCTGGCGGAG
ACCTATGACC TCGACCTGAG GGATCTGGCT ACCGCCGACG AGGACAGGTT CTTCGCCGAG
CTGAACGAGA TTTTCTCCGA CCCGCTGTTC CGGCAGATCG ACCTGCCGAA GCAGGAACTG
CGGGATTTGG CCGAACTCTG CCCCGGGGTG ACACATTCGT TACAACGGCT GTACGCCGCC
TATACCGAAG CGCGGCGCGG CGAAACGCTG GCGGCGCAGA TGGCCGACCG CGAGGAAGGC
ACAAGGTTCG AGGCCAACCC GATCGAGCGG GTCCGCGACC TGATCGAGGC CAACCGCAAC
TACTTCCCGG AAATCGAGCA GGCCGCGGAA AACCTGCGCG ACGAACTCAA CGTCCCGGCG
CAGGACCTGT TCGTGTCGTT GAGCGAGCGG CTGCGCGAAC AGCATTCCAT CGTCACCCGG
ATCATGCCGG TCGAGGTGAT GCGCGAGACG CTGCGCCGCT TCGACCGCCA CCGCCGGCAA
TTGCTGATCT CCGAACTGAT CGACGGCCCC GGCCGCGCCT TCCAGATCGC GTTCCAGATC
GGCATCACCG AATTCGGCAA GACCTTCGAC GCCATCGTCA ATCGCGCCGG AGCAGTCGAC
GACACCGCGC GGCGGCTGTA CCGCATCACC CTCGCCAACT ACTTCGCAGC CTCCGTGATG
ATGCCCTACG GCGCGTTCCA CGCCGCCGCC GAGACCTTGA ACTACGACGT CCACGTGCTG
GCGCAGCGCT TCAACGCCGG CTTCGAACAG GTCTGCCACC GGCTGACCAC GCTGCAGCGG
CCGAACGCCC GCGGCGTGCC GTTCTTCCTG CTGCGGGTCG ACAACGCCGG CAACGTCTCC
AAGCGGTTTT CCTCCGGCAC CTTCCCGTTC TCGAAATTCG GCGGCACCTG CCCGCTATGG
ACCGTGCACT CCACCTTTGA CACCCCGGAC CGGCTGTTGA AGCAGGTGAT CGAACTGCCC
GACGGCAGCC GCTACTTCTC GATCGCCCAA ATGGTGCGCC GCCCGGTGAT GCCGCATCCG
CAGCCGCAGC CGCGCTTCGC CATCGGGCTC GGCTGCGAAA TCCGCCATGC CGCGAAGCTG
GTCTATGCCG CGGGGATGGA TCTCGACAAG GAGGAAGCCA CCCCGATCGG GGTGAACTGC
CGGCTGTGCG AGCGCGAGCA TTGCAGCCAG CGCGCCGAGC CGCCGATCAC CCGGAGCCTG
ATCCTGGATG AGAATACCCG GCGGGCGTCG AGCTTTGCGT TCAGCAATGC GCGGGAGTTG
TGA
 
Protein sequence
MAGDSGKKLF VGPRFRRIRQ QLGLSQTQMA EGLGISPSYI NLIERNQRPV TAQILLRLAE 
TYDLDLRDLA TADEDRFFAE LNEIFSDPLF RQIDLPKQEL RDLAELCPGV THSLQRLYAA
YTEARRGETL AAQMADREEG TRFEANPIER VRDLIEANRN YFPEIEQAAE NLRDELNVPA
QDLFVSLSER LREQHSIVTR IMPVEVMRET LRRFDRHRRQ LLISELIDGP GRAFQIAFQI
GITEFGKTFD AIVNRAGAVD DTARRLYRIT LANYFAASVM MPYGAFHAAA ETLNYDVHVL
AQRFNAGFEQ VCHRLTTLQR PNARGVPFFL LRVDNAGNVS KRFSSGTFPF SKFGGTCPLW
TVHSTFDTPD RLLKQVIELP DGSRYFSIAQ MVRRPVMPHP QPQPRFAIGL GCEIRHAAKL
VYAAGMDLDK EEATPIGVNC RLCEREHCSQ RAEPPITRSL ILDENTRRAS SFAFSNAREL