Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1374 |
Symbol | |
ID | 3972470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 1499300 |
End bp | 1500481 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637924489 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_531255 |
Protein GI | 90422885 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCCCGA TTTCGCTTGT CGCTGCCGCT GCGGTGGCGC TGACCGCCGC CGCGGCCCAT GCCGACGATC TCAAGATCGC GCTGATCTAC GGCAAGACCG GACCGCTGGA AGCCTACGCC AAGCAGACCG AGACCGGGCT GCGGCTCGGC TTCGAATACG CCACCAAAGG CAGCATGACG GTCGACGGCC GCAAAATCGT GATCATCACC AAGGACGACC AGAGTAAGCC GGATCTCTCC AAGGCGGCGC TCGCCGAAGC CTATCAGGAC GACGGCGCCG ACATCGCGAT CGGCTCGACC TCCTCGGCGG CGGCGCTGGC CGACCTGCCG GTCGCGGAAG AGAACAAGAA GATTTTGATC GTCGAGCCGG CGGTCGCCGA TCAGATCACC GGCGAAAAGT GGAACCGCTA CATCTTCCGC ACCGGCCGCA ATTCCTCGCA GGACGCGATC GCCAACGCGG TGGCGATCGG CAAGCCCGGC GTCACCATCG CCACGCTCGG CCAGGACTAC GCGTTCGGCC GCGACGGCGT CGCCGCCTTC AAGGCGGCAC TCGCCAAGAC CGGCGCGACG CTGGCGGCGG AAGAATACGT GCCCACCACC ACCACCGATT TCACCGCCGC CGGGCAGCGG CTGTTCGACG CGCTGAAGGA CAAGCCCGGC AAGAAGATCA TCTGGGTGAT CTGGGCCGGC GGCGGCGATC CCTTGACCAA GCTGCAGGAC ATGGACCCGA AGCGCTACGG CATCGAGCTG TCCACCGGCG GCAACATTCT TCCCGCGCTC GCCGCCTATA AGCGGCTGCC CGGCATGGAG GGCGCCACTT ATTATTACTA CGACATCCCG AAGAACCCGG TGAACGACTG GCTGGTCGCC GAGCACCAGA AGCGCTTCAA AGCGCCGCCG GATTTCTTCA CCGCCGGCGG CTTCGCCGCG GCGATGGCGA CGGTGGCGGC CGTCACCAAG GCGAAGTCCA CCGACACCGA GAAGCTGATC GCCGCGATGG AGGGGCTCGA ATTCGACACC CCAAAAGGAA GAATGATCTT CCGCAAGGAG GATCATCAGG CGCTGCAGAG CATGTATCAC TTCAAGGTCA AGGTCGATCC GGAGCTGGCC TGGGCGGTCA ACGAGCCGGT GCGCGAGATC AAGATCGAGG ACATGGACAT CCCGATCCGC AACAAGCGGT GA
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Protein sequence | MRPISLVAAA AVALTAAAAH ADDLKIALIY GKTGPLEAYA KQTETGLRLG FEYATKGSMT VDGRKIVIIT KDDQSKPDLS KAALAEAYQD DGADIAIGST SSAAALADLP VAEENKKILI VEPAVADQIT GEKWNRYIFR TGRNSSQDAI ANAVAIGKPG VTIATLGQDY AFGRDGVAAF KAALAKTGAT LAAEEYVPTT TTDFTAAGQR LFDALKDKPG KKIIWVIWAG GGDPLTKLQD MDPKRYGIEL STGGNILPAL AAYKRLPGME GATYYYYDIP KNPVNDWLVA EHQKRFKAPP DFFTAGGFAA AMATVAAVTK AKSTDTEKLI AAMEGLEFDT PKGRMIFRKE DHQALQSMYH FKVKVDPELA WAVNEPVREI KIEDMDIPIR NKR
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