Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1308 |
Symbol | |
ID | 3972510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1421071 |
End bp | 1422477 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637924418 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_531189 |
Protein GI | 90422819 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR02040] transcriptional regulator PpsR |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.464609 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAGAAT CTGGCAAGGC AGTGGCCGAG ATCGCCACGA GACCAACGGG GCAGCCTGAT CTGACCCTGC TGCTGGATAT GGACGGAATT ATCCGGGACG CGACCCTGTC GGGCGCAATG GCCGGGGAGA GCATCGACGG TTGGCTCGGG CGGCCTTGGA GCGAGGTTGC CGGCGAGACC GGCGGCGACA AGATCAAGCG GATGGTCGAC GACGCCCGCG CGATCGGATT TTCAGCGTTC CGCCAAATCA ATCAAAGGTT TCCCAGCGGC GTTGAAATTC CCATGGAATT CACGACGATG CTGCTCGGCG ACCAGGCCGG CATGTTGGTG CTGGGCAAGA ATCTGCAGGC CGTCGCCGAA TTGCATGCGC GGCTGATTGC CGCCCAGCAG ACGATGGAGC GCGATTATTG GCGGCTGCGC GAGGTCGAGA CCCGCTATCG GCTGGTGTTC GAGGCCTCGA ACGAAGCCGT GGTGATCGTC TCACCGACGG ATCTGCGCAT CGTCGAGGCC AATCTCGCCG CGGTTCAGGC CTTGACCGGC TTGCAACGCG GAAACGAAGA TCTCGCGGGC CGCGAGTTTT TGCTCGATAT CCGCCCGCAG GATCGTGAGG CCGCCCGCGC CATGCTGTCG CGCGTGCGCG AGCGCGGTAA GGCGTTGAGC ATTCTCGTGC ATCTGGGACC CTCGGCGCAA CCCTGGATGC TGCGTGGCGC GTTGATGCCC TCGGAGCCCG GGCAGATTTT CCTGCTGCAC TTCACGCCGG CCGCGGTGTC CGCGCCGAGC CCTGAGCAGA TCGAACATTC GGCGATCAAG GAACTGATCG ATCGGGTGCC CGACGGCTTT GTCGCGCTCG ATGCGGCGGG GGGTGTACAG CATGCCAACC AGGCGTTTCT CGATCTGGTG CAGGTCGGAA CGAAGGCGGC GGTGATCGGC GAATCGTTGG CGCGATGGCT TTCCCAGCCG GGTGCGGACT GGAATGCATT GCTATCGCAG CTGCGGCGCT ACAAGACCGT TCGATTATTC CGCACCACGC TTCGCGGCGA ACTCGGAAGC GAGACCGAAG TGGAAATCTC CGCCGTCGAC GTCGATGGCG ACGAGCAAAG CTATGTCGGT GTGCTGCTTC GCAACGTCTC GCGCCGCTTT AACGACGCCG TGGAAGGGGA TTCCCTCCGC ATGGCGTTAG GCCCGATCAG CGAGCAGCTT GGCAGATCGT CGCTGCGCAA GCTGGTCAAG GATACCGTCA GCATCGTCGA ACAGCACTAC GTCAAAGAAG CGCTGGAACA TGCCGGCGGG AACAGGACGG CGACAGCAGA ACTGCTGGGA TTGAGCCGGC AAAGCCTTTA TGCCAAGCTG AACCGATACG GTCTCGACGA CCGCGAAGCG GACACCCAGG ATATCTCAGA GGACTGA
|
Protein sequence | MTESGKAVAE IATRPTGQPD LTLLLDMDGI IRDATLSGAM AGESIDGWLG RPWSEVAGET GGDKIKRMVD DARAIGFSAF RQINQRFPSG VEIPMEFTTM LLGDQAGMLV LGKNLQAVAE LHARLIAAQQ TMERDYWRLR EVETRYRLVF EASNEAVVIV SPTDLRIVEA NLAAVQALTG LQRGNEDLAG REFLLDIRPQ DREAARAMLS RVRERGKALS ILVHLGPSAQ PWMLRGALMP SEPGQIFLLH FTPAAVSAPS PEQIEHSAIK ELIDRVPDGF VALDAAGGVQ HANQAFLDLV QVGTKAAVIG ESLARWLSQP GADWNALLSQ LRRYKTVRLF RTTLRGELGS ETEVEISAVD VDGDEQSYVG VLLRNVSRRF NDAVEGDSLR MALGPISEQL GRSSLRKLVK DTVSIVEQHY VKEALEHAGG NRTATAELLG LSRQSLYAKL NRYGLDDREA DTQDISED
|
| |