Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1270 |
Symbol | |
ID | 3973028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 1385758 |
End bp | 1386843 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637924380 |
Product | ABC transporter related |
Protein accession | YP_531151 |
Protein GI | 90422781 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.117767 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.658587 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCGA TCGATGGCCA CGGTTCGGCG GTGCGGGTCG AAGCCTGCGG CAAGACCTTC ACCGACGGCA CCCGCGCCTT GCTGCCGGCG ACGCTCGACA TCGCCCGCGG CGAAACCTTG GTGCTGCTCG GACCAAGCGG CTGCGGCAAG ACCACGATGC TGCGGATCAT CGCCGGGCTG GAGCAGCCCG ACGCCGGCGG CCGGGTGCTG TTCGACGGCG CCGACATGAC CCGCGTGCCG ATCGAGCAGC GCAATGTCGG CATGGTGTTT CAGTCCTACG CGCTGTTTCC CAATATGAGC GTCGCCGACA ATATCGGCTA CGGCCTGAAG ATCCGCGGCG TCGGCAAGGC CGAGCGCGCG GCGCGGATCG CCGAACTGGT GGCGCTGACC AATATCGGCG GGCTGGAAAA TCGCCGCATC GAGCAGCTCT CCGGCGGCCA GCGGCAGCGC GTCGCGCTGG CCCGCGCGGT CGCCATTCGC CCCGGCATCC TGTTGCTGGA CGAACCGTTG ACCGCGCTCG ACGCCGCGCT GCGCGACCGG CTGCGCGGCG AACTCAACCG CCTGCTGCGC TCGCTGGGCA TCACCGCGAT CTACGTCACC CACGACCAGG CCGAGGCGAT GGAGCTCGGC GACCGCATCG TGGTGATGCG CCACGGCGCG ATCGCGCAGA TCGGCACGCC GCGCGAGATC TATTTCGCGC CGCAGAGCCG CTTCGTCGCC GAATTCGTCG GCGCCGCCAA CATCATCGAG GGCGCGGTCG ATAACGGGCT GCTGCAGCTA CCGGGCGGCT CGGTCGCGGT CGCCGCTTCC GGGATGCGCG CCGCCGCGGT GGCGATGATC CGCCCGGAGA CCATCCGGAT CGTCGATCCG GCGCAAGCCG CGCTCACCGG CATCGTCGAC AGCGTCGCCT TCGTCGGCGA TCGACAGCGC ATCGTGGTGC GCGGCGCGGC CGACAAGCCG CTGGCGATCG ACGCGCCGAA CACGATCGAG GTGAAGTGCG GCGAGCGGGT CGGGCTTTCG ATCGCCGCCG ACGCGGTGCG GCTGTTGCCG GACGACGCCG CCATCCCCCA CAGCAACGGA CAATAA
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Protein sequence | MTAIDGHGSA VRVEACGKTF TDGTRALLPA TLDIARGETL VLLGPSGCGK TTMLRIIAGL EQPDAGGRVL FDGADMTRVP IEQRNVGMVF QSYALFPNMS VADNIGYGLK IRGVGKAERA ARIAELVALT NIGGLENRRI EQLSGGQRQR VALARAVAIR PGILLLDEPL TALDAALRDR LRGELNRLLR SLGITAIYVT HDQAEAMELG DRIVVMRHGA IAQIGTPREI YFAPQSRFVA EFVGAANIIE GAVDNGLLQL PGGSVAVAAS GMRAAAVAMI RPETIRIVDP AQAALTGIVD SVAFVGDRQR IVVRGAADKP LAIDAPNTIE VKCGERVGLS IAADAVRLLP DDAAIPHSNG Q
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