Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1227 |
Symbol | |
ID | 3969104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1343315 |
End bp | 1345474 |
Gene Length | 2160 bp |
Protein Length | 719 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637924338 |
Product | glycogen debranching protein GlgX |
Protein accession | YP_531109 |
Protein GI | 90422739 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000170759 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACCAGA TGCCGAGGAT TTCCACCGCC CAGTCTGTGG CGTCGCCCGC TCGCCACCGC GTGCTCGAAG GCCGACCGTT TCCGCTAGGG GCCAACTGGG ACGGCCTGGG GGTGAATTTC GCGCTGTTTT CGGCCAACGC CACCAAGGTC GAGCTGTGCC TGTTCGACAA TGACGGGCTG CGCGAATTGG AGCGGATCGA ACTGCCGGAA TACACCGACG AGGTCTGGCA CGGCTATCTG CCTGACGCGC GGCCCGGACA AGTCTACGGC TACCGCGTTC ACGGCCCCTA TGCACCGGCC GAAGGCCACC GCTTCAACCC CAACAAGCTG CTGCTGGATC CCTACGCCAA GCAGATCGTC GGCGAGTTGC AATGGGATCC GGCGCTGTTC GGTTACACCC TCGGCTCGCC GGATGCCGAT CTGTCGTTCG ACCGGCGCGA CAGCGCCGCG TTCGTGCCGA AATGCCGGGT GATCGATCCG GCCTTCACCT GGGGCGAGGA CCGCCGGCCG CAAATCCCCT GGGAGCGGAC GATTTTCTAC GAGGCGCACG TCCGCGGCTA CACCATGAAG CACCCCGCCG TGCCGGAAGC GCTGCGCGGC AGCTTCGCCG GCATGATGCA TCACGAAGTG ATCGACTACA TCCGCAAGCT CGGCATCACC GCGCTGGAGC TGTTGCCGAT CCACGCCTTC GTCGACGACA GTTACCTGGT CGAGAAGGGC AAGCACAATT ATTGGGGTTA CAACACCATC AGCTTCTTCG CGCCGCAAGC GCGCTATTTG TCCGGGCCGT TCGTCAACGA GTTCAAGGAA ATGGTGGCGC AGTTTCACCG CGTCGGGATC GAGATCATCC TCGACGTGGT CTACAACCAC ACCGCCGAAG GCAACGAACT CGGACCGACG CTGTCGTTCA AGGGCATCGA CAACGCCTCG TACTATCGGC TCGCGCCGGA TCGGCGCTAC TACATCAACG ACACCGGCAC CGGCAACACC GTCAACCTGT CGCACCAGCG GGTGCTGCAG ATGGTCGCCG ATTCGCTGCG CTATTGGGCG CAGGAGACCC GGGTCGACGG CTTCCGCTTC GATCTCGCCA CCATTCTAGC CCGCGAGCCG TACGGCTTCG ACGAGGGCGG GGGCTTTCTC GACGCCTGCC GGCAGGATCC GGTGCTGAGC CAAGTCAAAT TGATCGCCGA GCCGTGGGAT TGCGGGCCGG GCGGTTATCA GGTCGGGCAC TTTTCGCCGG GCTGGGCGGA ATGGAACGAC CGTTTTCGCG ACACCACCCG GGCGTACTGG AAGGGCGACG AAGGCAAGCT CGCGGAGCTT GCCACCCGGT TGTCCGCCTC GCCGGATCTG TTCAACAAGC GCGGCCGCAA GCCGTGGGCT TCGGTCAACT TCGTCACGGC CCATGACGGC TTCACGCTGA ACGATCTGGT TTCCTACAAC CACAAGCACA ACGAGGCCAA CGGCGAGGAC AATCGCGACG GTCATTCGCA TAATTTGGCC TGGAATCACG GCGTCGAAGG ACCCACCGAC GATCCGGAGA TCCGCGAATT GCGTTTCCGG CAGATGCGCA ATCTGTTGTC CACCCTGCTG TTGTCGCGCG GCACCCCGAT GATCCTGGCC GGCGACGAAT TCGCCCGTTC GCAGCAGGGC AACAACAACG CCTACGCGCA GGACAACGAG ATCAGCTGGC TGGATTGGGA GGGCATTGAT GAGGACGGCC GCCGCTTGAT CGAGTTCACG CAGCGTCTGA TCGAGACCCG GCAACGCCAA CCGCTGTTTC ACCGCGGCCG CTTTCTAACC GGGGCATACA ACGAAGAACT CGGCGTCAAG GATGTCACCT GGGTCGATCC CAGCGGCGCC GAAATGACTT GCGAGCAATG GAACGACGGC AATGCGCGCT GCGTCGGCAT GTTGCTCGAC GGGCGCGCGC AGGTGACGGG CATCCGGCGC AAGGGGTCCG ACAACACGCT GTTTCTGTTG TTCAACGCTC ACCATGAGAC GGTGACGTTT AAATTCCCGG CGGTGCCGCA GTGCCGCACT TGGGAGTGTC TGATCGACAC CGATAAGCCA GGTGACGGCA AGCTCTCCCG GATCAAGAAA GAGGGCCACT ACGACATGGT GGGACGCTCG TTATCGCTTT GGGAGGGGCG GCAGGCCTGA
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Protein sequence | MNQMPRISTA QSVASPARHR VLEGRPFPLG ANWDGLGVNF ALFSANATKV ELCLFDNDGL RELERIELPE YTDEVWHGYL PDARPGQVYG YRVHGPYAPA EGHRFNPNKL LLDPYAKQIV GELQWDPALF GYTLGSPDAD LSFDRRDSAA FVPKCRVIDP AFTWGEDRRP QIPWERTIFY EAHVRGYTMK HPAVPEALRG SFAGMMHHEV IDYIRKLGIT ALELLPIHAF VDDSYLVEKG KHNYWGYNTI SFFAPQARYL SGPFVNEFKE MVAQFHRVGI EIILDVVYNH TAEGNELGPT LSFKGIDNAS YYRLAPDRRY YINDTGTGNT VNLSHQRVLQ MVADSLRYWA QETRVDGFRF DLATILAREP YGFDEGGGFL DACRQDPVLS QVKLIAEPWD CGPGGYQVGH FSPGWAEWND RFRDTTRAYW KGDEGKLAEL ATRLSASPDL FNKRGRKPWA SVNFVTAHDG FTLNDLVSYN HKHNEANGED NRDGHSHNLA WNHGVEGPTD DPEIRELRFR QMRNLLSTLL LSRGTPMILA GDEFARSQQG NNNAYAQDNE ISWLDWEGID EDGRRLIEFT QRLIETRQRQ PLFHRGRFLT GAYNEELGVK DVTWVDPSGA EMTCEQWNDG NARCVGMLLD GRAQVTGIRR KGSDNTLFLL FNAHHETVTF KFPAVPQCRT WECLIDTDKP GDGKLSRIKK EGHYDMVGRS LSLWEGRQA
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