| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0987 |
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| Symbol | mnmA |
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| ID | 3969711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1080591 |
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| End bp | 1081805 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924103 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_530876 |
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| Protein GI | 90422506 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.243634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000758773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCGCAG CAATGCTCAA CAGTCTCGAT CTCGAAGGTC GCCCCCAGGA TACGCGGATC
GTCGTCGCGA TGTCCGGCGG CGTGGATTCC TCGACCACGG CCGCGCTGTT GAAGTCCGAA
GGCTACGACG TCGTCGGCAT CACGCTGCAA CTCTACGATC ATGGCGCGGC GATTCATCGC
AAGGGCGCCT GCTGCGCCGG TCAGGACATC CACGACGCCC GCGCGGTCGC TGATCGGATC
GGCATTCCGC ATTACGTGCT GGACTACGAG AGCCGATTTC AGGAATCGGT GATCGACAGT
TTCGCGGCGA GCTACGCCAC CGGCGAAACC CCGGTGCCGT GCATCGAATG CAACCGCTCG
ATCAAATTTC GCGATCTGTT GTCGACCGCG CGCGAGCTCG GTGCCTCCGC GCTGGCGACC
GGGCACTACG TCTCGTCGCG CCGGCTGGCG GACGGCTCGC GCGCGCTGGT CTGCGCGTCC
GACGCCGACC GCGACCAGAG CTACTTCCTG TTTGCGACCA CCCGCGATCA GCTCGACTAT
CTGCGGTTTC CGCTCGGCGA TATGACCAAG CCGCAGACCC GCGAACTGGC GCGCAAGTTC
GGTCTCTCGG TCGCCGACAA GCACGACAGC CAGGACATCT GCTTCGTGCC GACCGGGCGC
TACACCGACG TGGTGGGGCG GCTGAAGCCG AATGCGATGG AGCCTGGCGA GATCGTCGAC
CTCGACGGCC GCGTGCTCGG CAAGCATCAG GGCATTGTGC ATTTCACCGT CGGTCAACGC
CGCGGATTGG GCATCGCATC CACAGCGCCG CTTTATGTGC TGCGGCTTGA GCCGTCGACG
CGGCGCGTCG TGGTCGGCCC GCGTGAAGCG CTGCGGATGG ACCGCATCGT GCTGCGCGAC
GTCAACTGGA TCGGCGACAG TTCGCTCGAC CGCGCGGTCG GCGACGGCCT CGAATTGTTC
GTGCGGGTGC GCTCGACGCG GCGGCCGCAG CCGGCCTGGT TGCGGGCGCA GGACGGCGGC
TATCAGGTTG AACTGGTTGC GGGAGAAGAT GGCGTCTCTC CCGGGCAGGC ATGCGTGTTC
TACGACGCAC CTGCCGGACA GGCCCGCGTG CTCGGCGGCG GCTTCATCAA GAGCGCGACG
CCGAGAGCCG CGGGGAAGAG CGCGTTGCGC GGAGCGCCAG CTTCGCGGCC GCAGGTGGCG
GACGCGCGCG GATAG
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| Protein sequence | MTAAMLNSLD LEGRPQDTRI VVAMSGGVDS STTAALLKSE GYDVVGITLQ LYDHGAAIHR
KGACCAGQDI HDARAVADRI GIPHYVLDYE SRFQESVIDS FAASYATGET PVPCIECNRS
IKFRDLLSTA RELGASALAT GHYVSSRRLA DGSRALVCAS DADRDQSYFL FATTRDQLDY
LRFPLGDMTK PQTRELARKF GLSVADKHDS QDICFVPTGR YTDVVGRLKP NAMEPGEIVD
LDGRVLGKHQ GIVHFTVGQR RGLGIASTAP LYVLRLEPST RRVVVGPREA LRMDRIVLRD
VNWIGDSSLD RAVGDGLELF VRVRSTRRPQ PAWLRAQDGG YQVELVAGED GVSPGQACVF
YDAPAGQARV LGGGFIKSAT PRAAGKSALR GAPASRPQVA DARG
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