| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0884 |
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| Symbol | |
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| ID | 3969803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 974219 |
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| End bp | 975838 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637924000 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_530773 |
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| Protein GI | 90422403 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.871675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATGA CTGCGAGCAA TGCTGTGGCC GTCGAGACCG AACAGCCGGT CGAGGAGTTC
ACCCATTGCT TCACCGGCGA ATGCCGGGTG AACGTGCTGC CGCTGTTGTT TCAGATCGCG
CAAATCATTT CCGACAGCGA GGACCTCGCC AAGACGCTGA CCATCATCCT GTCGGTGATG
CAGAAGCAAC TGCGCATCCA TCGCGGCATG GTGACGTTGT ACGACCGCGG CTCGGAGACC
ATCTTCATTC ACGAGAGCTT CGGCCTGTCC GAAGAGGAAA AGGCGCGCGG CATCTACGCG
TCGGGCGAGG GCATCACCGG CAAGGTGGTG GAGACCGGCC GCGCCATCGT GGTGCCGCAT
CTGCGCGACG ACCCGCACTT TCTCGACCGC ACGCAGTCGC ACGGCCACGG CAATACCAAC
GCCTCGTTCT TCTGCGTGCC GATCATTCAC GCGCAAAAGG TGATCGGCAC CATCAGCGCC
GAGCGGACCT ACCGCAACTC GCGGCTGCTG CGGCAGGACG TCCAGGTGCT CTCCACGGTG
GCGCTGATGG TGGCGCCGGC GGCCGAACTC TATCTGATCG AGAACATCGA GAAGGTCCGG
CTGGAGAACG AGAACCGCCG GCTGCAGAGC GTGCTGAAGG AGCGATTCAA GCCCTCCAAT
ATCATCGGCA ATTCCAAGCC GATGCAGCAG GTTTACGAGC TGATCCACAA GGTCGCCGGC
ACCAAGGCGA CCGTGCTGGT GCTCGGCGAA AGCGGCGTCG GCAAGGAGCT GGTCGCCAAC
GCGATCCACT ACAACAGCGC CACCGCCGAC GGCCCGTTCG TCAAGTTCAA CTGCGCAGCG
TTGCCGGAGA GCATCGTCGA GAGCGAATTG TTCGGCCATG AGAAGGGCGC CTTCACCGGC
GCGGTGGGGT TGCGCAAGGG CCGTTTCGAA CTCGCCGACG GCGGCACCAT CTTTCTCGAC
GAGGTCGGCG AACTGAGCCT GCTGATGCAG GCGAAACTGC TGCGGGTGCT GCAGGAAAAG
ACCTTCGAGC GGGTCGGCGG GTCGAAGCCG GTGAAGGTCG ATCTGCGGAT CATCGCCGCC
ACCAACCGCG ATCTGTTGGA GATGGTGGCG AAGGGCACGT TCCGGGAGGA CCTGTACTAC
CGGCTCTATG TGTTTCCGAT CACCATTCCG CCGCTACGGG AGCGCGGCAG CGACGTGATC
CTGTTGGCGG ACCACTTCGT CGCCCGCAAC GCCGCAGATA GCGGCCGCGA GGTGAAACGG
ATTTCGACCC CGGCGTTGAA CATGCTGATG GCCTATCACT GGCCGGGCAA CGTCCGCGAG
CTGGAGAACG TCATCGAGCG CTCGGTGATT CTTTCAGAGG ACGGGGTGAT CCACGGCTAC
AACCTGCCGC CGTCGCTGCA GACCTCGGCC GAGACCGGCA CCAATTTCGG CTGTAGCCTC
GGCGGCAAGG TGCAGGCGGT GGAATACGAG ATGATCGTCG AGGCGTTGAA GAGCCACCGC
GGCAACGTCA CCGACGCCGC GCAAGAGCTC GGCCTGACGC GGCGCATCCT CGGCCTGCGG
ATGGACAAAT ACGGCATCAA CTACAAGACC TTTCGCCGCG GCCGCGAGGC GAGGGGGTAG
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| Protein sequence | MAMTASNAVA VETEQPVEEF THCFTGECRV NVLPLLFQIA QIISDSEDLA KTLTIILSVM
QKQLRIHRGM VTLYDRGSET IFIHESFGLS EEEKARGIYA SGEGITGKVV ETGRAIVVPH
LRDDPHFLDR TQSHGHGNTN ASFFCVPIIH AQKVIGTISA ERTYRNSRLL RQDVQVLSTV
ALMVAPAAEL YLIENIEKVR LENENRRLQS VLKERFKPSN IIGNSKPMQQ VYELIHKVAG
TKATVLVLGE SGVGKELVAN AIHYNSATAD GPFVKFNCAA LPESIVESEL FGHEKGAFTG
AVGLRKGRFE LADGGTIFLD EVGELSLLMQ AKLLRVLQEK TFERVGGSKP VKVDLRIIAA
TNRDLLEMVA KGTFREDLYY RLYVFPITIP PLRERGSDVI LLADHFVARN AADSGREVKR
ISTPALNMLM AYHWPGNVRE LENVIERSVI LSEDGVIHGY NLPPSLQTSA ETGTNFGCSL
GGKVQAVEYE MIVEALKSHR GNVTDAAQEL GLTRRILGLR MDKYGINYKT FRRGREARG
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