Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0865 |
Symbol | |
ID | 3969823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 954542 |
End bp | 955225 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637923981 |
Product | RNA polymerase sigma factor |
Protein accession | YP_530754 |
Protein GI | 90422384 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTCG CGCTCGATAT CTGGGCTCCG GTTGAAGTCG CGCCGGCGGT GATTGCGAAG TCGACATCGG TTTCCTCGGC GCCGGCGGCA GCGTGCGAGC AGCAACTGCC GACGCCGCCG TTGGACGAGG ACGAACAGCT TCTCAATCGG CTCGCCGAAC ATGACGAAGC GGCGTTTCGG CTGTTGGTCG AGCGCCACAT CGATCGCGCA TTCGGCATCG CGCTGCGCAT CGTCGGCAAT CGCGCCGATG CCGAAGACGT CGTGCAGGAT ACCATGCTCA AGGTGTGGAC GCATCGCGGG CAGTGGCAGC ACGGCCGCGC CAAGTTCTCC ACCTGGCTGT ATCGCGTGGT CACCAACCGC TGCATCGATC TGCACCGCCA GCCGCGCACC GACTGTGTCG ACGCGGTGCC GGAGCCGGCC GATGGCCGGC CGGACGTGGT CAGCACCATG CAGCGCGACG AGGTTACGCA TCTGCTGGAG AACGCGATGC GGCAGTTGCC CGAGCAGCAG CGCATCGCGG TGATTTTTTC GTACCACGAG AACATGAGCA ACGGCGAAAT TGCCGAGGTG ATGGAGACCA CGGTGGCGGC GGTGGAGTCG CTGCTGAAAC GCGGCCGTCA GCAGCTGCGC GATCTGCTGC GCCGGCACGA GCGCGACATC CGCCACGTGT TTACCGAATA CTAA
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Protein sequence | MAFALDIWAP VEVAPAVIAK STSVSSAPAA ACEQQLPTPP LDEDEQLLNR LAEHDEAAFR LLVERHIDRA FGIALRIVGN RADAEDVVQD TMLKVWTHRG QWQHGRAKFS TWLYRVVTNR CIDLHRQPRT DCVDAVPEPA DGRPDVVSTM QRDEVTHLLE NAMRQLPEQQ RIAVIFSYHE NMSNGEIAEV METTVAAVES LLKRGRQQLR DLLRRHERDI RHVFTEY
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