| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0835 |
|---|
| Symbol | |
|---|
| ID | 3969832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 921328 |
|---|
| End bp | 922422 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637923951 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_530724 |
|---|
| Protein GI | 90422354 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.643048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.134814 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTTC CTCCCAGCTT CCGGCAGGTT CGCGCCTTTC TGGCGCTCGC GCGACACCTG
AAATTCACCA GTGCGGCCCA AGAACTGAAT GTCTCGCAGC CCACGCTGAC GGTGCAGATC
AATCAGTTAG AGCAACAGCT CGGCATCCGG CTGTTCGATC GCGACAAACG CCGGGTCGAA
CTGACGCCGG CCGGCCGCAA CATATTGCCG CTGATGGAAC GTCTGTCCTT GAACATGGAC
GAGGTTCTGT TGGCCGCGTC GGATCTCACC TATGCCAAGC GCGGAATTAT CAGGGTGGCG
GCGCTGCCCT CGGTGGCCGC CAGTTTTCTG CCGCGCGGGA TCAAGGACTT TCGCGAGCAA
AATCCAGGCA TCATCATCGA CGTCTGGGAC GTGGTCGGCG AAGAGATCAT CAAGCTGGTG
AAGGCCGAGG AAGTCGATTT TGGCATTGGC ACCCATTTCA GCGCCGACAA AAGCATCAAA
GTGCAGGACT ATTTGTCCGA TAGTCTGTGC GCATTCTTCC CCGTCGAGCA TCCTTTGAAT
ACAGCTGCAT CGGTCGTGTA CGTCAGAGAC GTCGCATCCT GTCCACTCGT TGTGACGCGG
AAAAACAGTA GCGTCAGGGT GTTGTTCGAG CGCTCCATGG CGCGAGAAGG CTGCGAACTG
AATATCGTCA TGGAGACCAA TTACATGTCG ACGGCGCTCA GCATGGCACG AGCCGGTGTC
GGCGTCGCCA TTCTGCCGTC CACGGCCGTC GAAGCGGGGA ACATGGCCGG CCTCAGCTTC
AAACCCATCG ATCCACCCCA TTTCAATCGC CGTGTCGGCA TCATCTGCAA GGCCGATCGC
ACGCTGCAGC CTATTGCCAG TCACTTCGTC GAGGAATTGC TCAGGATGAC GCCGCTTCGT
GCGGACAATG GCTTCAAGGA CCTCCGCCGG TTCGGCGCGT GGTCGGAACC ATGCGCATTC
GACGAAAATG CTGACCTCGC AGCAACCTGG CAAGGGCAGC CGTGTTCGAT TACATCGCCC
GCGTCCTCGG CGCCGTACGG CGCCATCGAA GATCATATGC CTCATCACTT GCGTTCGAGC
GGAACGTCGG ACTAG
|
|---|
| Protein sequence | MTFPPSFRQV RAFLALARHL KFTSAAQELN VSQPTLTVQI NQLEQQLGIR LFDRDKRRVE
LTPAGRNILP LMERLSLNMD EVLLAASDLT YAKRGIIRVA ALPSVAASFL PRGIKDFREQ
NPGIIIDVWD VVGEEIIKLV KAEEVDFGIG THFSADKSIK VQDYLSDSLC AFFPVEHPLN
TAASVVYVRD VASCPLVVTR KNSSVRVLFE RSMAREGCEL NIVMETNYMS TALSMARAGV
GVAILPSTAV EAGNMAGLSF KPIDPPHFNR RVGIICKADR TLQPIASHFV EELLRMTPLR
ADNGFKDLRR FGAWSEPCAF DENADLAATW QGQPCSITSP ASSAPYGAIE DHMPHHLRSS
GTSD
|
|---|
| |