| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0811 |
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| Symbol | dapD |
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| ID | 3969883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 894110 |
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| End bp | 894955 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637923927 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_530701 |
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| Protein GI | 90422331 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.440447 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGTTGT CCGCCCTCGA AACCTCCATC AACACCGCGT TCGACGCGCG CGATACCGTC
AGCACCGCGA CCAAGGGCGA AGTCCGCGAC GCCGTCGAGC ACGCGCTCGA CATGCTGGAC
AAGGGCGAGG CGCGGGTCGC CGAGCGCGGC GACGACGGCA AATGGACCGT CAACCAGTGG
CTGAAGAAGG CCGTGCTGCT GTCGTTCCGG CTCAACGACA TGAGCACGAT TTCCGGCGGC
CCGGGCGGCG CCACCTGGTG GGACAAGGTG CCGTCGAAAT TCTCAGGCTG GGGCGAGAAC
CGGTTTCGCG ACGCCGGTTT CCGCGCGGTG CCGGGCGCGA TCGTGCGGCG CTCCGCCTTC
ATCGCCAAGA ACGTCGTCTT GATGCCGTCC TTCGTCAATC TCGGCGCCTA TGTGGACGAG
GCCACCATGG TCGACACCTG GGTGACCGTC GGCTCCTGCG CGCAGATCGG CAAGCGCGTG
CACATCTCCG GCGGCGTCGG CATCGGCGGC GTGCTGGAGC CGCTGCAGGC GGGTCCCGTC
ATCATCGAGG ACGATTGCTT CATCGGCGCC CGCTCCGAAG TCGCCGAGGG CGTCATCGTC
CGCAGGGGCG CGGTGCTGTC GATGGGCGTG TTCCTCGGCG CCTCGACCAA GATCATCGAC
CGCGACTCCG GCGAGATCTT CGTCGGCGAG GTGCCGGAAT ATTCCGTGGT GGTGCCGGGC
AACCTGCCCG GCCGTCCGCT GAAGAACGGC CAACCCGGCC CCTCCACCGC CTGCGCGGTG
ATCGTCAAGC GGGTCGACGA GCGCACCCGC TCCAAGACCA GCATCAATGA ATTGTTGCGG
GACTAA
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| Protein sequence | MSLSALETSI NTAFDARDTV STATKGEVRD AVEHALDMLD KGEARVAERG DDGKWTVNQW
LKKAVLLSFR LNDMSTISGG PGGATWWDKV PSKFSGWGEN RFRDAGFRAV PGAIVRRSAF
IAKNVVLMPS FVNLGAYVDE ATMVDTWVTV GSCAQIGKRV HISGGVGIGG VLEPLQAGPV
IIEDDCFIGA RSEVAEGVIV RRGAVLSMGV FLGASTKIID RDSGEIFVGE VPEYSVVVPG
NLPGRPLKNG QPGPSTACAV IVKRVDERTR SKTSINELLR D
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