Gene RPC_0546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_0546 
Symbol 
ID3970787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp594272 
End bp594541 
Gene Length270 bp 
Protein Length89 aa 
Translation table11 
GC content64% 
IMG OID637923662 
ProductRNA-binding S4 
Protein accessionYP_530440 
Protein GI90422070 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1188] Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.879286 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAGCGCC AGCGTCTCGA CAAATGGCTG TGGCATGCAA GGGTGGTCAA AGCCCGAACC 
AGCGCCGCTG CGCTGGTCGA AGCCGGTCAC GTTCGCGTCA ATGGTGGCCG GCAAACGGCG
CCCGGCCATC TGCTGAAGCG CGGCGACGTG CTGACCGTCA GCCTGGATCG CACCGTTCGC
CTGCTCAAGG TGGAGGCATT CGCCGCGCGC CGAGGCGATG CCAATGCGGC TACTGGACTA
TATACCGACC TGCAAAAGCC CGAAGTCTAG
 
Protein sequence
MERQRLDKWL WHARVVKART SAAALVEAGH VRVNGGRQTA PGHLLKRGDV LTVSLDRTVR 
LLKVEAFAAR RGDANAATGL YTDLQKPEV