| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0386 |
|---|
| Symbol | |
|---|
| ID | 3970875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 415074 |
|---|
| End bp | 418202 |
|---|
| Gene Length | 3129 bp |
|---|
| Protein Length | 1042 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637923500 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_530280 |
|---|
| Protein GI | 90421910 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3893] Inactivated superfamily I helicase |
|---|
| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTTT TCAATACTCC GGCCTCGGCG CCGTTCCTGC GTACGCTGAT TGCCGCGCTG
GTCGAGGGCA GGCTGGTGCC GGGCTTCGAG GCCCGCGCCA ATCCTGAGCG GCTCGCCGAA
GCCACGCTAT ATCTGCCGAC GCGGCGCGCC GGGCGGATGG CGCGCGAGAT CTTTCTCGAC
GTGCTGCAGA GCGACGCGGT GCTGCTGCCG CGGATCGTGG CGCTCGGCGG CATCGACGAG
GACGAACTGG CGTTTGCCGA CGACGCCGAG CCGTTCGACG GAGTGGCGTC GCTGGAGATT
CCGCCGAACC TCGCCGAACT CGACCGCCGG CTGATCCTGG CGCGACTGGT CGCCGCCTGG
GGCAAGGAGC TGGCGCCGCT GGTGGTCGGC GGCCCGGCCT CGGCGCTGGC GTTGGCCGGC
GATCTGGCGC GGCTGATGGA CGACATGGTG ACCCGCAAGG TCGAGTGGGC CGCACTCGAC
GGGCTGGTGC CCGATGAACT CGACAATTAT TGGCAGCTGA CGCTGGGCTT TCTTAAGATC
GCGCGAGAAC ATTGGCCGGC CTATCTCGCC GCCAACGCGC TGATCGAACC CGCGGCGCGG
CGCGACCTGC TGATCGAAGC CGAGGCCAAG CGGCTCGCCG CGCATCACAC CGGTCCGGTG
ATCGCCGCAG GCTCCACCGG CTCGATGCCG GCGACCGCAA GATTTCTCCG CGCCATCGCC
GCCTTGCCGC AGGGCGCGGT GGTGCTGCCC GGGCTCGACA CCCATCTCGA CGACGACGCT
TGGCGAAAGA TCGGCGGCAT CCGCGACGCC AACGGCAAGG CTGTTACGCC GCCGTCGTCG
AATCATCCGC AATACGCGCT GCACGCGCTG CTCGAGACCT TCGGCATCGA ACGCCGCGAC
GTCGCTCCGC TCGGCGCGCC GGCGCCGCGC GGCCGCGAAT TGTTGGCCTC CGAGGCGATG
CGGCCGTCCA ACGCCACCGC GCAATGGCAC CAGCGGCTCG CCGAGCCCGC GGTCGAGCAG
AACATCGCCG CCGGCATGAC CGAGCTTGCG GTGATCTCCG CCGACAATCC GGAGCTGGAA
GCGCTGGCGA TCGCGGTGGC GATGCGGCAG GCTCGCGAAC TCAACAAGTC GGCCGCGCTG
GTGACGCCCG ACCGTGCGCT GGCGCGGCGG GTGATGGCGG CGCTGGGCCG CTGGAAGCTG
CCGTTCGACG ATTCCGGCGG CGACGCTTTG ATCGACACCC CGCCGGGGGT TTTCGCACGG
CTTTCGGCGC AGGCTGCGAC CGCGCAGCTC GAGCCGGCGA CCTTGCTGGC GCTGTTGAAA
CATCCGCTGC TGCGGCTCGG CCAAGCGCCC GGTTTCTGGC GCGGCGCCAT CGAGACGCTG
GAGCAGGCGG TGCTGCGCGG CACCCGTCCC GCCGCCGGCA GCGCGGGCCT GTCCCGCGAC
TTCGCCCGGT TCCGCGACGA ACTCGGCAAG CTGCGTAGGC GCGAGACCTC GATGCTGCAC
GGCTCCGAGC CGCGCGCGCG GCTCAACGAC GACGCGCTCG ATCGCGCGCA GGCGCTGATC
GCGCAACTGC AAACCGCGCT GGCGCCGCTG GAAACGCTTG ATCCGAATAG GCCGCTGGAT
TTTTCCGACC TCGCCACCAA GCATCGCGCG GTGGTCGCGG CGCTGTCGCG CGACGACGAT
GGGTTCGTAG CGGCGTTCGA TGGTCCGCAG GGCAACGCCC TGAACACCGC GTTCGACGAT
CTGCCGGCGC CGAGCGGACT CGCGGCGCAA CCCGGCGACT ACACCGAACT GTTCCAGACC
GCGTTTGCCG ACCGCGTCGT GCGCCGCCCG GAAGCCGAGA GCGCTTCGCT GCGGATCTTC
GGTCCGCTGG AAGCGCGGCT GACGCAATGC GATCGGGTGA TTCTCGGCGG GCTGGTCGAA
GGCATCTGGC CGCCGGCGCC GCGCAGCGAT CCCTGGCTGA GCCGGCCGAT GCGGCATCAA
TTGGGTCTCG ACCTGCCGGA GCGCCGCATC GGGCTGTCGG CGCACGACTT CGCCCAGATG
CTCGGCGCCG ATGAAGTGAT CCTCAGCCAC GCCGCCAAGG TGGCCGGCGC ACCGGCGGTG
GCGTCGCGCT TCCTGCATCG GCTGGAGGCG GTGGCCGGCG CGGAACGCTG GAAAGCCGCC
GAGGCGCGCG GACAAATCTA TCTCGATTAT GCCCACGCGC TCGACCGCCC CGACAAGGTC
GTGCCGATCA CGCAGCCGAT GCCGCGGCCG CCGCGCGACG CCCGGCCGCT GCAATTGTCG
GTCACCGCGA TCGAGGACTG GCTGCGCGAT CCCTACACCA TCTACGCCAA GTTCATTCTC
AAGCTGGCGC CGCTCGACCC GGTCGACATG CCGCTGTCGG CGGCGGATCG CGGCTCGGCG
ATCCATGAGG CGCTCGGCGA ATTCACGCAA GTTTTTGCGC AGGCGCTGCC GGACGATCCG
GCCGCCGCGT TGCGCGCCAT CGGGCAAAAA CATTTCGCGC CGCTGATGGA ACGGCCGGAG
GCGCGCGCGC TGTGGTGGCC GCGCTTTCTG CGGATCGCCC ATTGGTTCGC CACCTGGGAG
ACCGAGCGCC GGCTCAACGT CGCCGGCGTC GACGCCGAGA CCCGCGGCAC GCTCAGCATT
CCGCTCGACG CCACGCGTCG TTTCGTTCTC TCCGCCCGCG CCGACCGCAT CGAACGCCGC
GCCGACCGCA CCTTCGCGAT CCTCGACTAC AAGACCGGCC GCCCACCGAC CGGCAAGCAG
GTGCGGATGG GGCTGTCGCC GCAACTGACG CTCGAAGCCG CGATCTTGCG CGAAGGCGGC
TTCGAAGGCA TCGCCGCGGG CTCTTCGGTG AGTGAACTGG TCTACGTCAA ACTCAGCGGC
AACAACCCGC CGGGCGAAGA AAAAATCCTC GAACTGAAAC GCGACCGCGC CGAAGAAGCG
CTGTTCCCCG ACGACGCCGC GATCGAGGCC CGCGCCAAGC TCGAAGCCTT GATCCGCAAA
TTCGACGATG CCACGACACC CTACTCCTCG CTGAATCTGC CGATGTGGGC GAACCGCTAC
GGCGACTACG ACGATCTGGC GCGGATCAAG GAATGGTCGG CGGCCGGCGG GCTCGGAGAC
GACCAATGA
|
|---|
| Protein sequence | MRVFNTPASA PFLRTLIAAL VEGRLVPGFE ARANPERLAE ATLYLPTRRA GRMAREIFLD
VLQSDAVLLP RIVALGGIDE DELAFADDAE PFDGVASLEI PPNLAELDRR LILARLVAAW
GKELAPLVVG GPASALALAG DLARLMDDMV TRKVEWAALD GLVPDELDNY WQLTLGFLKI
AREHWPAYLA ANALIEPAAR RDLLIEAEAK RLAAHHTGPV IAAGSTGSMP ATARFLRAIA
ALPQGAVVLP GLDTHLDDDA WRKIGGIRDA NGKAVTPPSS NHPQYALHAL LETFGIERRD
VAPLGAPAPR GRELLASEAM RPSNATAQWH QRLAEPAVEQ NIAAGMTELA VISADNPELE
ALAIAVAMRQ ARELNKSAAL VTPDRALARR VMAALGRWKL PFDDSGGDAL IDTPPGVFAR
LSAQAATAQL EPATLLALLK HPLLRLGQAP GFWRGAIETL EQAVLRGTRP AAGSAGLSRD
FARFRDELGK LRRRETSMLH GSEPRARLND DALDRAQALI AQLQTALAPL ETLDPNRPLD
FSDLATKHRA VVAALSRDDD GFVAAFDGPQ GNALNTAFDD LPAPSGLAAQ PGDYTELFQT
AFADRVVRRP EAESASLRIF GPLEARLTQC DRVILGGLVE GIWPPAPRSD PWLSRPMRHQ
LGLDLPERRI GLSAHDFAQM LGADEVILSH AAKVAGAPAV ASRFLHRLEA VAGAERWKAA
EARGQIYLDY AHALDRPDKV VPITQPMPRP PRDARPLQLS VTAIEDWLRD PYTIYAKFIL
KLAPLDPVDM PLSAADRGSA IHEALGEFTQ VFAQALPDDP AAALRAIGQK HFAPLMERPE
ARALWWPRFL RIAHWFATWE TERRLNVAGV DAETRGTLSI PLDATRRFVL SARADRIERR
ADRTFAILDY KTGRPPTGKQ VRMGLSPQLT LEAAILREGG FEGIAAGSSV SELVYVKLSG
NNPPGEEKIL ELKRDRAEEA LFPDDAAIEA RAKLEALIRK FDDATTPYSS LNLPMWANRY
GDYDDLARIK EWSAAGGLGD DQ
|
|---|
| |