| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0366 |
|---|
| Symbol | |
|---|
| ID | 3970894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 391234 |
|---|
| End bp | 393090 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637923480 |
|---|
| Product | GAF sensor hybrid histidine kinase |
|---|
| Protein accession | YP_530260 |
|---|
| Protein GI | 90421890 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.425505 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATG CCTCGAAGCG CCCTCCCATT CCCGTCGCAC CAGATGACAA TCCGGCGTCG
ACCGACGCGA CCAAAATCGA CAAGCTGCTG CGGCAACAGG CGGCGATTGC GCGGTTCGGC
ACGTTTTCGC TGCGCGAATG GGATCTCTCG AAGATCCTGA ACGAAGCGGT GCGGGTCTGC
GCCGAGGGGC TCGACGCCCC CTTCAGCAAG GTCTGCCGGC ATCGCCCCGA GCAGAACGAT
CTCTTGATCG TCGCCGGCTA CGGCTGGCAG GATGGCGTGG TCGGCCATGT GGTGTCGCGC
GCCGATATGA GTTCGCCGCA GGGGCGCGCG TTTTCCACCG GCACGCCCGC GGTCTGCGAC
GATCTGAAGA AGGACCGCTA CTTCGATCCG CCGGCGTTCT ATGCCGCGCA CGGCATCGTC
TCGACCATCG ACGTCGTCAT CAGAGGCAGC GGCGACCAGC CCTACGGCAT CCTGGAAATC
GACAACAATC AGCAGCAAGA CTACGACCAA TACGACGTCA ATTTCCTGAC CGGCTTCGCC
AATGTGCTGG CCGAAGCCGT GGCGACCGCA TCGCGAGCGC GGGAGTTGCA GGACGCCTTC
GATCGGATGA AGCGGCTGGC CGAGGACAAG GAGCGCCTGC TGCAGGAGAA GAACGCCGTC
GATCTGCAGA TGCGCCAGGC GCAAAAGATG GAAGCGGTCG GGCAATTGAC CGGCGGCCTC
GCCCACGACC TCAACAACAT CCTCACCGTC ATCTCCGGCA CCATCGAGAT TCTCGCCGCG
GCGGTCGCGG ACCGGCCGCA ACTCGCGGCG ATCGCCAAGA TGATCGACGA GGCCGCGGTG
CGCGGCGCCG AACTGACGCA GCGGCTGCTG GCATTCGCGC GCAAGCAGCC GCTGCATCCG
CGCGCGATCG ACGTCAATGC GCTGATCGTC GAGGCGACCA ATCTGCTACG GCCGACGCTC
GGCGATCACA TCACCCTCGT CACCACGCTG GCCGGGGAGC TGTCGCGCGC CCTGATCGAT
CCCGGACAAC TCACCAACAC CATCCTCAAC CTCGCGCTCA ACGCCCGCGA TTCGATGCCC
GAGGGCGGCG AGGTCAGCAT CACCACCCGC GACATCGTGC TCGACGCGAG CGCCGCGGCG
GCCAATGAAC TCGATGCCGG CAGCTATGTG CTGGTCGCGG TCGGCGATTC CGGGCACGGC
ATTCCGGCGG ACATCCTGCC CAGGGTGTTC GAGCCGTTCT TCACCACCAA GGATGTCGGC
AAGGGATCCG GTCTCGGCCT CAGCATGGTC TATGGCTTCG TCAAGCAATC CAACGGCCAC
GTCGTGATCG AGAGCGTGCC GGACCACGGC ACCACGGTGA CGATGCTGCT GCCGCAAGCC
ACCGGGGTCG CTCAACCGCA ATTGGAATTG GTCAGCCAAC CGAAGATTCA GGGTGGCACC
GAGACCATCC TGGTGGTGGA GGACGACGAC CTGGTGCGCC GCTACGTGAT CGGACAGATC
GAAAGCCTGG GCTATGCGAC GCTGACCGCG GCCAACGCCG CGGAAGCGCT GGTGGTGATC
GATAGCGCGC AGCCGATCGA TCTGTTGTTC ACCGACATGA CCATGCCCGG GGCGCTCAAC
GGCCGGCAAC TGGCCGTCGA AGCGCGGCGT CGCAGGCCGG CGTTGAGCGT GCTGTTCAGT
TCGGGCTTCA CCGAGGAGAG CGTGGTTCAT GATGGCCATA TCGATGCCGA GATGCTGTTC
CTCGCCAAGC CCTACCGCAA AGCGGATCTG GCGCGCATGA TCCGCGTCGC CCTGACCGGC
ACCGCGCAGC CACAGGCCGT GGCGCAGCCG GGGGCGCCGA TTCCCGCCGT GGCGTGA
|
|---|
| Protein sequence | MDDASKRPPI PVAPDDNPAS TDATKIDKLL RQQAAIARFG TFSLREWDLS KILNEAVRVC
AEGLDAPFSK VCRHRPEQND LLIVAGYGWQ DGVVGHVVSR ADMSSPQGRA FSTGTPAVCD
DLKKDRYFDP PAFYAAHGIV STIDVVIRGS GDQPYGILEI DNNQQQDYDQ YDVNFLTGFA
NVLAEAVATA SRARELQDAF DRMKRLAEDK ERLLQEKNAV DLQMRQAQKM EAVGQLTGGL
AHDLNNILTV ISGTIEILAA AVADRPQLAA IAKMIDEAAV RGAELTQRLL AFARKQPLHP
RAIDVNALIV EATNLLRPTL GDHITLVTTL AGELSRALID PGQLTNTILN LALNARDSMP
EGGEVSITTR DIVLDASAAA ANELDAGSYV LVAVGDSGHG IPADILPRVF EPFFTTKDVG
KGSGLGLSMV YGFVKQSNGH VVIESVPDHG TTVTMLLPQA TGVAQPQLEL VSQPKIQGGT
ETILVVEDDD LVRRYVIGQI ESLGYATLTA ANAAEALVVI DSAQPIDLLF TDMTMPGALN
GRQLAVEARR RRPALSVLFS SGFTEESVVH DGHIDAEMLF LAKPYRKADL ARMIRVALTG
TAQPQAVAQP GAPIPAVA
|
|---|
| |