Gene RPC_0230 details

Gene Information

• Locus tag: RPC_0230
• Symbol: leuD
• ID: 3971140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris BisB18
• Kingdom: Bacteria
• Replicon accession: NC_007925
• Strand: +
• Start bp: 246209
• End bp: 246814
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637923343
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_530124
• Protein GI: 90421754
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00838951
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGACAAGT TCACCACGCT GGAAGGCGTC GCGGCGCCGC TGAAGATCAT CAATGTCGAT 
ACCGACATGA TCATCCCCAA GCAGTTCCTG AAGACCATCA AGCGCACCGG GCTCGGCAAG 
GGGCTGTTCT CGGAGCAGCG CTACAAGGAC GACGGCAGCG AGAATCCGGA TTTCATCCTC 
AACAAGCCGG CCTATCGCAA CGCCAAGATC CTGGTCGCCG GTGACAATTT CGGCTGCGGC 
TCGAGCCGCG AGCACGCCCC CTGGGCGCTG CTCGACTTCG GCATTCGCTG CGTGATCTCG 
ACCTCGTTCG GCGACATCTT CTACAACAAC TGCTTCAAGA ACGGCGTGCT GCCGATCCGG 
GTGACGCAGG CCGACCTCGA CAAGCTGTTC GACGACGCCG AGCGCGGCGC CAACGCCACC 
ATCACCATCG ACCTCGGCAA GCAGGAAATC CGCGGGCCGG ACGGCGGCAC GGTGAAGTTC 
GACATCGACC CGTTCCGCAA GCACTGCCTG ATGAACGGCC TCGACGACAT CGGGCTGACG 
CTGGAAAAGA AAGCCTCGAT CGACAGCTAC GAGGACAAGG CCAAGACCGA ACGCGCCTGG 
GCGTAA 

 

Protein sequence

MDKFTTLEGV AAPLKIINVD TDMIIPKQFL KTIKRTGLGK GLFSEQRYKD DGSENPDFIL 
NKPAYRNAKI LVAGDNFGCG SSREHAPWAL LDFGIRCVIS TSFGDIFYNN CFKNGVLPIR 
VTQADLDKLF DDAERGANAT ITIDLGKQEI RGPDGGTVKF DIDPFRKHCL MNGLDDIGLT 
LEKKASIDSY EDKAKTERAW A