| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0149 |
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| Symbol | |
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| ID | 3971291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 163391 |
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| End bp | 166495 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637923261 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_530043 |
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| Protein GI | 90421673 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGACGGC GTAGTCCCGT ACGAGATTTT TTCGAGGGAG GGCGCGCTTA TACGTCGTTC
CGACGTACGC TCCGCCGTGG CAATGATCTG GTCGCGATGG CGATCTATCA TCTTCACGTC
AAGGTCATTG GCCGCAAGTC TGGCTCCAGC GCGGTGGCGT CGGCCGCCTA CCGCTCGGGC
TCGCGTTTGC GCGACGAGCG CCTGGACCGC AGCCAAGACT TTTCCGCCAA GCGCGGCGTC
GTCCATTCCG AGGTGATGCT GCCGGACAAT GCGCCGGCGG CATGGAGCGA CCGCGAGCGG
CTCTGGAACG ATGTCGAAGC CTTCGAAGTT CGCAAGGATG CGCAGCTTGC CCGCGAGGTC
GAGTTCGCCA TTCCGCGCGA GATGACGCAA GCGCAAGGCA TCGAACTGGC CCGCGACTTC
GTGCAGTCGG AGTTCGTCGG TTTTGGCATG ATCGCCGATC TCAATGTGCA TTGGGACATC
GGCGAGGACG GCATGCCCAA ACCTCATGCC CATGTCATGC TGACGATGCG GCAAATCAAC
GTCAACGGGG ACGAGAATGG CTTCGGCCCG AAGGTGCGGG ATTGGAACCG CACGGAGATG
GTCGAGCGTT GGCGCGAACG GTGGGCCGAG CTTGCCAACA AACGTCTGGC CGAGCTCGAC
ATCGACGCCC GCATCGACCA TCGCAGCTTC GAGGCGCAGG GGATCGGGCT GGAGCCGCAA
AGCCAGATCG GCGCGTCCGC GCAGCGGATC GAAGGCGAAG GGGTCGAGGC CGCCGACCGC
GCGGAGATGC ACCGCGAGAT CGCGCGCGGC AACGGCGAGC GCATTATTGC CGATCCGTCC
ATCGCACTGG ACGCGATCAC GCATCAGCAA TCGACCTTCA CGCCGCGCGA CATGGCAAAG
TTTGCGCATC GGCACAGCGA CGGGATCGAC CAGTTCAACG CAGTGATGGG CGCGATGCGC
GGCGCGCCCG ATCTGGTCGA ACTCGGACAG GACGGGCGCG GTGAGGACCG TTTCACCACC
CGCGACATGA TCGAGGCCGA ACAGCGCCTG CACCGCGCTG CCGAACTCAT GGCCGAGCGG
GAACGCCATG AGGTGAACGA CGCGGACAGG CAGGCGGCGC TCGTGCGTGC GGAAGCGCGC
GGCCTTGTCC TGTCCGGCGA GCAGGCCGAT GCGCTGGCGC ATGTCACGGA CGGGCGCGAT
CTCGGGATCG TGGTCGGCCA TGCCGGAACG GGAAAGAGCA CGATGCTGGG CATGGCGCGG
GAGGCATGGG AGGCGGCGGG TTACGAGGTC CGGGGCGTGG CGCTTTCGGG TATCGCCGCC
GAGAATCTCG AAGGCGGATC GGGCATTGCG TCACGCACCA TCGCCAGCAT GGAACATGGC
TGGGGCCAGG GCCGCGACCT GCTCAGCGCG CGCGATGTGT TGGTGATCGA CGAGGCCGGC
ATGGTCGGCA CGCGCCAGCT GGAGCGCGTG CTGTCCCATG CCGCCGAGGC TGGCGCAAAG
GTAGTGCTGG TCGGCGATCC GCAACAGCTG CAATCCATCG AAGCGGGCGC GGCCTTCCGC
TCGATTCATG AGCGCCACGG CGGCGTCGAG ATCGGCGAGG TGCGCCGCCA ACGCGAGGAT
TGGCAGCGCG ACGCCACGCG CGACCTGGCG ACTGGCAAGA CCGGCGCAGC GATCGATGCC
TATGACAAGA ACGGCATGGC GCATCCTGCG GCGTCCCGCG AGCAGGCGCG CGACGATTTG
ATCGACCGCT GGGACCGCGA CCGGCAGGCA TCACCGGACC GCAGCCGCAT TATCCTCACC
CACACCAACG ACGAGGTGCG CGCGCTCAAC GAGGGGGCGC GAGAGCGGAT GCGAGCAGCG
GGCGATCTCG GCGAGGATGT GCGTGTCACG GTCGAACGCG GCGCGCGCTG CTTCGCCACC
GGGGATCGCA TCATGTTCCT GCAAAACGAA CGCGGCCTTG GCGTGAAGAA CGGAACGCTC
GGAACCGTCG AACAGGTCAG CGCGCTGTCC ATGTCGGCGC GCATCGACGA TGGCCGTTCC
GTTGAATTCG ACCTGAAGGA TTACAACCGC ATCGACCACG GCTATGCCGC GACCATCCAC
AAGGCGCAGG GCATGACGGT GGACCGGACC CATGTGCTGG CAACGCCGGG CATGGATGCC
CACGGCAGCT ATGTCGCCCT ATCGCGTCAC CGCGACAGCA CGGACCTGCA TTATGGCCGT
GACGACTTCG CCAGCCAGGA CCGGCTGGTT CGTGCCCTGT CGCGCGCCCG GGCCAAGGAC
ATGGCGTCGG ATTACGAGCG CGCCGAACCG ATTCAGGGCT ACGCCGAGCG GCGCGGCATC
ACTTTCCGCG AGCGTGTCGC CGAGATCGTC CAGAAACTCG TGCCGGAGAA GCTACGCGGT
ATGTTTGACG GCCTGCGCTT TCCTGGAGAT GTGTCCGGCC ACGATGGTGG ACGGAGGCCA
GAGCGGGAAA CGCCGGAAAG GGAAAGCGCC ACGGCGGCGG TCCGGCGAAC GACGGATGCG
CCGGAAAGGA CCGTGGCAGC GGACACGGAC GTGGCGCTGC GTCAAGCTCG CACCAAGGCG
CTCATCCGCC ACGCCCGCGC CGTGAATGCG ATCTTCGAGA TGCAGCAGCA GGGCGGCAAG
GCCAGCTCGG AGCAGGTGAA GGAATTGCAG GAGGCCCGCA AGGAGTTCGA GGCGGTGCGG
CCCTATGGAT CGCACGACGC CGAAGCCGCC TACAAGACGA ACCCGGATCT CGCAGAGCAA
GCCGCTTCGG GCAATCCCGC CCGCGCGATC CGCGCCCTGC AACTTGAAAC CGAGCTGCGG
ACCGATCCAA GCCGCCGCGC CGACCGCTTC GTAGAGCGTT GGCAGAAGCT CGATCAGACC
AGCCAGCACC AGTATCAGGC GGGCGACATG TCGGGCTACA AATCAACGCG GGCGGCGATG
GGTGACATGG CCAAGAACTT AGAGCGCGAT CCGCAGCTTG AATCCATTCT CGCGGGCCGC
AAGCAACAAC TCGGCATCGC GTTCGAAACA GGCCGCCGGC TCGGCCAGGA ACTGGCGTTC
ACCCACGGCA TCGATCTCGG CAGAGGACGA GGGATCGGGC TCTGA
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| Protein sequence | MRRRSPVRDF FEGGRAYTSF RRTLRRGNDL VAMAIYHLHV KVIGRKSGSS AVASAAYRSG
SRLRDERLDR SQDFSAKRGV VHSEVMLPDN APAAWSDRER LWNDVEAFEV RKDAQLAREV
EFAIPREMTQ AQGIELARDF VQSEFVGFGM IADLNVHWDI GEDGMPKPHA HVMLTMRQIN
VNGDENGFGP KVRDWNRTEM VERWRERWAE LANKRLAELD IDARIDHRSF EAQGIGLEPQ
SQIGASAQRI EGEGVEAADR AEMHREIARG NGERIIADPS IALDAITHQQ STFTPRDMAK
FAHRHSDGID QFNAVMGAMR GAPDLVELGQ DGRGEDRFTT RDMIEAEQRL HRAAELMAER
ERHEVNDADR QAALVRAEAR GLVLSGEQAD ALAHVTDGRD LGIVVGHAGT GKSTMLGMAR
EAWEAAGYEV RGVALSGIAA ENLEGGSGIA SRTIASMEHG WGQGRDLLSA RDVLVIDEAG
MVGTRQLERV LSHAAEAGAK VVLVGDPQQL QSIEAGAAFR SIHERHGGVE IGEVRRQRED
WQRDATRDLA TGKTGAAIDA YDKNGMAHPA ASREQARDDL IDRWDRDRQA SPDRSRIILT
HTNDEVRALN EGARERMRAA GDLGEDVRVT VERGARCFAT GDRIMFLQNE RGLGVKNGTL
GTVEQVSALS MSARIDDGRS VEFDLKDYNR IDHGYAATIH KAQGMTVDRT HVLATPGMDA
HGSYVALSRH RDSTDLHYGR DDFASQDRLV RALSRARAKD MASDYERAEP IQGYAERRGI
TFRERVAEIV QKLVPEKLRG MFDGLRFPGD VSGHDGGRRP ERETPERESA TAAVRRTTDA
PERTVAADTD VALRQARTKA LIRHARAVNA IFEMQQQGGK ASSEQVKELQ EARKEFEAVR
PYGSHDAEAA YKTNPDLAEQ AASGNPARAI RALQLETELR TDPSRRADRF VERWQKLDQT
SQHQYQAGDM SGYKSTRAAM GDMAKNLERD PQLESILAGR KQQLGIAFET GRRLGQELAF
THGIDLGRGR GIGL
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