| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4686 |
|---|
| Symbol | |
|---|
| ID | 3912504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5301495 |
|---|
| End bp | 5302187 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637886591 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_488280 |
|---|
| Protein GI | 86751784 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACTG ACGTGTCGAG CCGGCCGGAT CATCGGCTGA TGTTGACCGT TTCCGGCTTG
ACCAAATCCT ATCGTTCGGG ACAGGACAGC GTCGCCGTGC TGCGCGGCGT CGATTTCGCG
TTGGCTGCGG GTGAAAGCGT GGCGCTGACT GGCGAATCCG GGAGTGGCAA GAGCACGCTG
CTGCATCTGA TCGCCGGACT CGACCAGCCC GATGGCGGCG AGATCGTCTA CGGCGATCTG
ACGATCTCGC GGCTCGCCGA CGCCGCACGC GCCGCCTTCC GCCGCGAACG GCTCGGCCTG
GTGTTTCAGC AGTTCAATCT GATCCCGAGC CTGACCGTCG CCGACAATCT GTCGTTCCAG
TCGCGGCTGG CGGGTCGCCA CGACGCGCAA TGGCACGCCG AACTGATCGA GCGGCTCGGC
CTCGGCGCGC TGCAGAAGCG CTATCCGGAG CAACTCTCCG GCGGCCAGCA GCAGCGCGTC
GCGATCGGCC GCGCGCTGGC GGTGAAGCCC GTCCTGCTGC TCGCCGACGA GCCGACCGGC
AATCTCGACG AGGCCACCGC CGACGACGTG CTGGCGCTCG CCCGAGATCT GGTGCGCCGC
ACCGGCTGCG GCTTTCTGAT GGTGACGCAC AGCGAACGGC TCGCCGCCAT GCTCGACCGC
AGGGTCAATC TGCATGCGGG GCTGATCCAT TGA
|
|---|
| Protein sequence | MRTDVSSRPD HRLMLTVSGL TKSYRSGQDS VAVLRGVDFA LAAGESVALT GESGSGKSTL
LHLIAGLDQP DGGEIVYGDL TISRLADAAR AAFRRERLGL VFQQFNLIPS LTVADNLSFQ
SRLAGRHDAQ WHAELIERLG LGALQKRYPE QLSGGQQQRV AIGRALAVKP VLLLADEPTG
NLDEATADDV LALARDLVRR TGCGFLMVTH SERLAAMLDR RVNLHAGLIH
|
|---|
| |