| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4547 |
|---|
| Symbol | |
|---|
| ID | 3912364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5142669 |
|---|
| End bp | 5143811 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637886451 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_488141 |
|---|
| Protein GI | 86751645 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.727864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC GTATCCAGGA ATTCCTCCGC GCCCGCCGCA ACGAAGGTCA GGATCTCGAG
CCCTGCCTGG TCGTCGACCT CGACGTCGTG CGCGACAACT TCGCCAGCTT CGCCAAGGCG
TTGCCGGACA GCCGCGTGTT CTACGCGGTG AAGGCCAACC CGGCGCCGGA AGTGCTGTCG
CTGCTGGCCT CGCTCGGCTC GTGCTTCGAC TGCGCCTCGG TGCAGGAGAT CCAGATGGCG
CTGGCCGCCG GCGCGACGCC GGACCGCATC TCGTTCGGCA ACACCATCAA GAAGGAACGC
GACATCGCGC GCGCCTTCGC GCTCGGCATT CGCCTGTTCT CGGTCGACTG CAGCGCCGAG
GTGGAGAAGA TCGCGCGTTC GGCGCCGGGT TCGAAGGTGT TCTGCCGCAT CCTGTACGAT
TGCGCCGGCG CCGAGTGGCC GCTGTCGCGC AAGTTCGGCT GCGATCCGGA GATGGCGGTC
GACGTGCTCG ACGCCGCCAA GCGCCTCGGC CTGGAGCCCT ATGGAATCTC GTTCCATGTC
GGCTCGCAGC AGCGCAAGGT GAAGGCGTGG GACCGTGCGC TGGCGATGGC CGCGACCGTG
TTCCGCGACT GCGCCGAGCG CGGCATCAAC CTGTCGATGG TCAACATGGG TGGCGGCTTC
CCGACCAAGT ATCTGAAGGA AGTGCCGGCC GTGGTGCAGT ACGGGCGTTC GATCTTCCGG
GCGCTGCGCA AGCACTTCGG CAACCAGATC CCGGAGACCA TCATCGAGCC GGGCCGCGGC
ATGGTCGGCA ACGCCGGCAT CATCGAGACC GAGGTCGTTC TGATCTCCAA GAAGAGCGAC
GAGGACGAGA TGCGCTGGGT CTATCTCGAC ATCGGCAAGT TCGGCGGTCT CGCCGAGACG
ATGGACGAGT CGATCCGCTA CGCGATCAAG TCGCGCCATG ACGGCGCGGA GATGGCGCCC
TGCGTGCTCG CCGGCCCGAC CTGCGATTCG GCCGACGTGA TGTACGAGAA GTTGCCGTAC
CCGCTGCCGG TGACGCTCGA GATCGGCGAC AAGCTGCTGA TCGAAGGCAC CGGCGCCTAC
ACGTCGACCT ACTCGGCGGT AGCCTTCAAC GGCTTCCCGC CGCTGCGGAC CTACCACATC
TGA
|
|---|
| Protein sequence | MTERIQEFLR ARRNEGQDLE PCLVVDLDVV RDNFASFAKA LPDSRVFYAV KANPAPEVLS
LLASLGSCFD CASVQEIQMA LAAGATPDRI SFGNTIKKER DIARAFALGI RLFSVDCSAE
VEKIARSAPG SKVFCRILYD CAGAEWPLSR KFGCDPEMAV DVLDAAKRLG LEPYGISFHV
GSQQRKVKAW DRALAMAATV FRDCAERGIN LSMVNMGGGF PTKYLKEVPA VVQYGRSIFR
ALRKHFGNQI PETIIEPGRG MVGNAGIIET EVVLISKKSD EDEMRWVYLD IGKFGGLAET
MDESIRYAIK SRHDGAEMAP CVLAGPTCDS ADVMYEKLPY PLPVTLEIGD KLLIEGTGAY
TSTYSAVAFN GFPPLRTYHI
|
|---|
| |