| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4259 |
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| Symbol | |
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| ID | 3912072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4844586 |
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| End bp | 4845851 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637886164 |
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| Product | putative sigma factor |
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| Protein accession | YP_487858 |
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| Protein GI | 86751362 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.294953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC TCGCCTGGAT CGACACCGCG ATCACGGCGT CCCGGCCCCA GGCGATCGGC
GCGCTGCTGC GCTATTTCCG CGATCTCGAC ACCGCCGAGG AGGCGTTCCA GAACGCCTGC
CTGCGGGCGC TGAAAGCCTG GCCGCAGAAC GGCCCGCCGC GCGATCCGGC CGCATGGCTG
ATCCTGGTCG GCCGCAATGT CGCGATCGAC GACCTCCGCC GCGGCAAGAA GCAACAGCCG
CTGCCCGACG ACGAAGCGAT CTCCGATCTC GACGACGCCG AGAGCGCGCT CGCCGAGCGG
CTCGACGGCT CGCATTATCG CGACGACATC CTGCGGCTGC TGTTCATCTG CTGTCATCCC
GAATTGCCGC CCACCCAGCA GATCGCGCTG GCGCTGCGCA TCGTCTCGGG GCTGACCGTG
CCGCAGATCG CGCGGGCGTT TCTGGTGTCG GACGCGGCGA TGGAGCAGCG CATCACCCGC
GCCAAGGCCA AAGTCGCCCG CGCCCGCGTG CCGTTCGAAA CCCCGGGCGC GCCGGAGCGC
AGCGAACGGC TGGGCGCGGT GGCGGCGATG ATCTACCTGG TCTTCAACGA GGGCTATTCG
GCGTCGGGCG ACACTGCGGG AATCCGCGCG CCCTTGTGCG AGGAGGCGAT CCGGCTGGCG
CGGCTGCTGC TGCGGCTGTT TCCGTCCGAG CCCGAGATCA TGGGGCTCAC TGCTTTGATG
CTGCTGCAGC ATGCGCGCGC GCCGGCGCGC TTCGATGCCC ATGGCGAGAT CGTGCTGCTC
GACGAGCAGG ACCGCGGCCT GTGGGACACA AAGCTGATCG CCGAGGGCCT GGCGCTGATC
GACAAGGCGA TGCGTCATCG CCGCACCGGC GCGTATCAGA TCCAGGCCGC GATCGCCGCC
CTGCACGCCC GTGCGACCCG GCCCGAGGAT ACCGACTGGG CGCAGATCGA TCTGCTGTAC
GGCTCGCTGG AGATCCTGCA GCCGTCGCCG GTGATCACGC TCAACCGCGC GGTCGCGGTG
TCCAAAGTGC GCGGCGCCGA GGCGGCGCTG GCGATGATCG CACCGCTGGA AGAGAGGTTG
TCGAACTACT TCCATTATTT CGGCACCAGG GGCGCGCTGC TGCTGCAGCT GGGTCGCCGT
GACGAGGCGC GGACCGCCTT CGACCGCGCC ATCGCGCTGG CCCGGACCAC CGCCGAGGCC
AACCACATCC GCATGCATCT CGACCGCTCG AAGCGCGACG ACGCGGCCGA GCGGATCAAT
CCGTAG
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| Protein sequence | MTDLAWIDTA ITASRPQAIG ALLRYFRDLD TAEEAFQNAC LRALKAWPQN GPPRDPAAWL
ILVGRNVAID DLRRGKKQQP LPDDEAISDL DDAESALAER LDGSHYRDDI LRLLFICCHP
ELPPTQQIAL ALRIVSGLTV PQIARAFLVS DAAMEQRITR AKAKVARARV PFETPGAPER
SERLGAVAAM IYLVFNEGYS ASGDTAGIRA PLCEEAIRLA RLLLRLFPSE PEIMGLTALM
LLQHARAPAR FDAHGEIVLL DEQDRGLWDT KLIAEGLALI DKAMRHRRTG AYQIQAAIAA
LHARATRPED TDWAQIDLLY GSLEILQPSP VITLNRAVAV SKVRGAEAAL AMIAPLEERL
SNYFHYFGTR GALLLQLGRR DEARTAFDRA IALARTTAEA NHIRMHLDRS KRDDAAERIN
P
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