| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4108 |
|---|
| Symbol | |
|---|
| ID | 3911915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4678020 |
|---|
| End bp | 4678982 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637886012 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_487712 |
|---|
| Protein GI | 86751216 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.87577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0844825 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTC TGGTTATCGA CGACAGTGAA GACGGACGTG ATGTGGCGGA AGCCATGTTG
ATTGCCGCAG GTTACGAGGA CGTCCAAACA TCCGATTCGG CGGCGGATGC GTATCAGATA
CTCGCGGTGG GCCATTCAAC TGCGGCCAAA GTGTCGCCGG TAGATCTGAT CCTGATGGAC
ATCATGATGC CCGAGATCGA CGGCATCGAA GCTTGCGCCC GCATTCGCGG CGAACCGCAC
CTGATGGATG TGCCGATCAT CATGGTGACG TTGCTCGACG ACGTCGACAG TCTCGCCAAT
GCGTTCGTGG CCGGCGCTAC GGACTACATC ACCAAGCCGC TCAAACGGGT CGAGCTGCAC
GCTCGGGTTC GTTCGGCGCT GAAGTTGAAG TCCGAACTCG ATCGACGCCG CGCGCGGGAG
CGGGAACTGT TGGAGTTCTT GGCGACCTTG GGCGACCGTC GGACGTCACA CTGGATCGAC
GAAGGAACCG GACTGATCAT CGGGGAGGTG GCCGAAGCCT ACCTGACCGC TGAAAATCAG
GGCGGCGGCG ACCTGTCCGT CATTGCTCTC GGTCTCGATC GGCTGGAAGC CTTGCGCCAG
ATCCTGGGCG ATGCGGCAGC GGCGAACATC GTGTCCCGCG TGGCCCGCTT GGTCAGAGCG
GCGACAGCGA CGGTCGGAGT CGTCGCCGGC GCTTATCGCA ATGGCACCAT CGTTCTGATC
GTTCCGGAAT TGCCCCGGCA GCGCGCACTC GATCTCGGCG AAGCGCTGCG TGCCGCTGTG
TCCGATCTTC GTATTGCGGA ACCGGAAGCG ACTTGCGCCG ACCACGCGAC CGCGAGCGTC
GCGGTCGTCA CCGGACGAGT GGATAGCAGC GTCGAGAGAA TTCACTTGCT GACACGCGCG
ATGGCGGCGG TGTCCCGCGC GGCTGCCGAA GGTGGCGATC GCATTGTGAG TGAAGCCGCC
TGA
|
|---|
| Protein sequence | MRILVIDDSE DGRDVAEAML IAAGYEDVQT SDSAADAYQI LAVGHSTAAK VSPVDLILMD
IMMPEIDGIE ACARIRGEPH LMDVPIIMVT LLDDVDSLAN AFVAGATDYI TKPLKRVELH
ARVRSALKLK SELDRRRARE RELLEFLATL GDRRTSHWID EGTGLIIGEV AEAYLTAENQ
GGGDLSVIAL GLDRLEALRQ ILGDAAAANI VSRVARLVRA ATATVGVVAG AYRNGTIVLI
VPELPRQRAL DLGEALRAAV SDLRIAEPEA TCADHATASV AVVTGRVDSS VERIHLLTRA
MAAVSRAAAE GGDRIVSEAA
|
|---|
| |