| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3985 |
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| Symbol | |
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| ID | 3911792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4551395 |
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| End bp | 4553593 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637885889 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_487589 |
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| Protein GI | 86751093 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.525883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.142655 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGGCTG AAGCGACGAT CTCCCCCGCA TTCGGAACCG CCGATCTTTC GAACTGCGAG
CAGGAGCAAA TTCATCTTGC CGGTTCGATT CAGCCGCACG GCGCTCTGCT GGTGATCAGC
GAGCCGGATC ACCGTATCGT TCAAGCCAGC GCCAACGCCG CCGAGTTCCT CAACGTCGAG
CGGGTGCTCG GTCTGCCGCT CGCCGAACTC GAAGGCGATC TGCTGATCCG TATCCTGCCT
CATCTCGACC CGACTTCCGA GGGAACGCCG ATCGCCGTGC GCTGCCGGAT CGGCAGCCCG
GGGGCGGATT TCGACGGCTT GATCCATCGG CCGCTGGAAG GGGGGCTGAT CGTCGAGCTG
GAGCGCGCCG GCCCGCCGGT CGATCTGTCG CTGATGGTCG GGCAGGCGCT GGACAAGATC
CGGACCGCGA GCTCGGTTCG CGCCTTGTGC GAAGAAGCTG CGGTGCTGTT CCAGAATCGC
ACCGGCTACG ACCGGGTGAT GATCTACCGT TTCGACGAAG AGGGCCACGG CGAGGTGTTC
TCCGAGCGCC ACGTCCCGGG GCTCGAATCC TATCTCAGCA ACCGTTATCC GTCCTCCGAC
ATTCCGCAAA TGGCGCGACG CTTGTACGAG CGAATTCGCG TGCGCGTGCT GGTCGACGTC
GGCTACGAGC CGGTGCCCCT GCAGCCGCGG CTGTCACCTC TCACCGGGCG CGACCTCGAC
ATGTCGAGCT GCTTTCTCCG CTCGATGTCG CCGATCCATC TGCAGTATCT GAAGAACATG
GGCGTCCGCG CGACGCTGGT GGTGTCGCTG GTGGTCGGCG GCAAACTGTG GGGACTGGTC
GCCTGCCATC ACTATCAGCC GCGCTTCATC CATTTCGAGC TGCGCGCCGT CTGCGAGCTG
CTCGCCGAGG CGATCGCCAC GCGGATCACC GCACTCGAGA GCTTTGCGCA AAGCCAGTCC
GAACTGTTCG TGCAGCGGCT CGAGCAACGC ATGATCGAAG CGATCTCGCG GGAGGGCGAC
TGGCGCGCGG CGATCTTCGA CACGACGCAG TCGATCCTGC CGCCGGTCGG TGCGACTGGT
GGCGCGCTGG TGTACGAGGG GCAGGTCACC ACGATCGGTG AAGTGCCAGG CACCCAGGAT
ATTCGCGAGG TCGCCGCCTG GCTCAGCCGC CAGCCCCGCG TGTCGGTGAT CTCGACATCG
TCGCTCGGTC TCGATGCGCC GGAATTCGCG CCGTTGACGC GCGTCGCGAG CGGCGTCGCG
GCGGCGCCGG TCTCCAACCA TCCGGGCGAA TTCCTCATCT GGTTCCGTCC CGAGCGTGTG
CGCACGGTGA CCTGGGGCGG CGATCCGAAA AAGCCTTTCG TGATCGGAGA TACGCCGGCT
GATCTTTCCC CCCGGCGCTC GTTCGCCAAA TGGAATCAGG TGGTCGAAGG GACTTCCGAT
CCGTGGACGC CGGCCGACCT GGCAGCGGTG CGGATGATCG GCCAGTCTGT CGCCGACATC
GTCTTGCAGT TCCGCGCCGT ACGAACGCTG ATCGCCCAGG AGCAACTCGA CCAGTTCTCC
CGTCAGGTGC TGACCTCCGA CCATCCGGTG GTGATCGCCG ACATCGAAGG CAAGATCCTG
CTGATGAACG ACGCGTTCAC ATCGATGCTG CCGCAGGCGC ATCCGCCCGT CCAGCGACTG
GACGATCTCG CCTCGGCCTT CGTCGAACCC TACGATTTCC TGCGGAATGT CGGCGAGCTG
ATCAGTCGAC GGCGCGGCTG GCGGGGCGAA TTGCTGTTGC GCGGCGGGGG AAACGAGCCG
CGTCCGTTGA TGGTGCGGGC CGACCCGGTG GTCCCGTCGC GCGATCGCGC GCTCGGCTTC
GTGCTGATCT TCACCGACAA CACCGACCGC CGCGCTGCTG AAGCGGCGCG TGGCCGTTTC
CAGGAAGGCA TCATCAAAAG CAGTCGGGTC GGCAGCGTGC GGTTGGATTC GAAATCCGAC
CTCGTCTATC AGAATCTGTT GTCGTCGCTG GTCGAGAACG CCCAGCTCGC GGCGCTGGAG
ATCACCTATG GGGTCGAGAC CGGGCGGATT GCCGAAATGC TCGAAGGCGT GCGCAATTCG
ACGCTGCGCA CTGCGGAAGT CCTCGAGTAT TTGATGCTGC ACGCGTCCCG CACCAGCGGG
AACGACAACA CGACAAGAAA CAACAAGTCC AACAGCTAG
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| Protein sequence | MTAEATISPA FGTADLSNCE QEQIHLAGSI QPHGALLVIS EPDHRIVQAS ANAAEFLNVE
RVLGLPLAEL EGDLLIRILP HLDPTSEGTP IAVRCRIGSP GADFDGLIHR PLEGGLIVEL
ERAGPPVDLS LMVGQALDKI RTASSVRALC EEAAVLFQNR TGYDRVMIYR FDEEGHGEVF
SERHVPGLES YLSNRYPSSD IPQMARRLYE RIRVRVLVDV GYEPVPLQPR LSPLTGRDLD
MSSCFLRSMS PIHLQYLKNM GVRATLVVSL VVGGKLWGLV ACHHYQPRFI HFELRAVCEL
LAEAIATRIT ALESFAQSQS ELFVQRLEQR MIEAISREGD WRAAIFDTTQ SILPPVGATG
GALVYEGQVT TIGEVPGTQD IREVAAWLSR QPRVSVISTS SLGLDAPEFA PLTRVASGVA
AAPVSNHPGE FLIWFRPERV RTVTWGGDPK KPFVIGDTPA DLSPRRSFAK WNQVVEGTSD
PWTPADLAAV RMIGQSVADI VLQFRAVRTL IAQEQLDQFS RQVLTSDHPV VIADIEGKIL
LMNDAFTSML PQAHPPVQRL DDLASAFVEP YDFLRNVGEL ISRRRGWRGE LLLRGGGNEP
RPLMVRADPV VPSRDRALGF VLIFTDNTDR RAAEAARGRF QEGIIKSSRV GSVRLDSKSD
LVYQNLLSSL VENAQLAALE ITYGVETGRI AEMLEGVRNS TLRTAEVLEY LMLHASRTSG
NDNTTRNNKS NS
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