Gene RPB_3956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3956 
Symbol 
ID3911763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand- 
Start bp4514568 
End bp4515176 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content63% 
IMG OID637885860 
Producthypothetical protein 
Protein accessionYP_487560 
Protein GI86751064 
COG category[S] Function unknown 
COG ID[COG1704] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.992492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.709907 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGAAGT TTCTGACGGT GCTGGCGGCG CTTGCCACGC TGAGCCTGAC CAATTGCGGC 
TACAATGCCA TCCAGAGCGA AGACCAGGAG GTCAAGGCGA CCTGGTCGGA GGTGGTCAAC 
CAGTATCAGC GCCGCGCCGA TCTGGTGCCG AACCTCGTCA ACTCGGTGAA GGGCTTCGCG 
CAGCAGGAAA AAGACGTGCT GCTCGGCGTC ACCAACGCCC GAGCCAAGGT CGGCAGCGTG 
CAGGCCACGC CCGAGGTGCT GAACGATCCG GCCGCCTTCC AGAAGTTCCA GCAGGCGCAA 
GGGGAACTCT CCAGCGCGCT GTCGCGGCTG CTGGTGGTGA CCGAGAACTA TCCGCAGCTC 
AAATCCGACG CGCTGTTCAC CAATTTGATG GCGCAGCTCG AAGGCACCGA GAACCGCATC 
ACCGTGGCGC GCAACCGCTA TATCAAGGCG GTGCAGGCCT ATAACGTCAC GGTGCGCTCG 
GTGCCGACCA ACTTCACCGC AATGATGTTC GGCTACAAGG AAAAGCCGAA CTTCACGGTC 
GAGAACGAGG GCGCGATCTC GACCGCGCCC AAGGTCGACT TCAACACGGC CCCGGCCCCG 
GCGAAGTAA
 
Protein sequence
MRKFLTVLAA LATLSLTNCG YNAIQSEDQE VKATWSEVVN QYQRRADLVP NLVNSVKGFA 
QQEKDVLLGV TNARAKVGSV QATPEVLNDP AAFQKFQQAQ GELSSALSRL LVVTENYPQL 
KSDALFTNLM AQLEGTENRI TVARNRYIKA VQAYNVTVRS VPTNFTAMMF GYKEKPNFTV 
ENEGAISTAP KVDFNTAPAP AK