Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3909 |
Symbol | |
ID | 3911714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4462199 |
End bp | 4462747 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637885811 |
Product | sigma-24 (FecI-like) |
Protein accession | YP_487513 |
Protein GI | 86751017 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0477634 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACGT CGGCTGAGTT GGTCTGGCTG CTTGCCGCTG TGGCCAAAGG GGATCAGGCA GCCTTCGAGC GGCTCTACAA CGCCACGCGC GCGAAACTCT ACGGCGTGGT TCTGCGTATC TTGAGACGTC AGGATCTCGC GGAAGAAGTC ATCCAGGAAA CGTACGTCAA GATCTGGAAC AGCGCCGGAA CGTTCAATCC CGGCGTGGCG TCGCCGATCA CCTGGATGGC GTCGATCGCG CGGAACCGGG CCATCGACGT GGCGCGCAAG CGCAGCGAGG TTTCGATCGA GGACGAGCCT GCGGCGCAGG AAGCCGCGGC GGATTCGCCG GATCCGCTGG CGCGCCGGGA GATGACTGAA GAATTGAAGC GGCTGCTCGA ATGCGTCGGC CGGCTGGAGC CGGATCGCCA GAAGCTCGTG CTGCTCGCTT ACTACAATGG TTGGAGCCGC GAACAGCTCG CGGCGAAATT CGATGCGCCG GTGAACACGG TCAAGACTTG GCTGCGTCGC AGCCTGCTCG ATATCCGGGA GTGTCTGGGA CTCGTCTGA
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Protein sequence | MLTSAELVWL LAAVAKGDQA AFERLYNATR AKLYGVVLRI LRRQDLAEEV IQETYVKIWN SAGTFNPGVA SPITWMASIA RNRAIDVARK RSEVSIEDEP AAQEAAADSP DPLARREMTE ELKRLLECVG RLEPDRQKLV LLAYYNGWSR EQLAAKFDAP VNTVKTWLRR SLLDIRECLG LV
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