| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3443 |
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| Symbol | |
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| ID | 3911245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3948654 |
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| End bp | 3950240 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637885346 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_487050 |
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| Protein GI | 86750554 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.203092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0980299 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC GTTCTTCCGA TCTCACCTCG CAGCCGACCA GCCCGGTGCG CCGTTCGCTG
TTCTCGGCGC GCAAATTCGC GCTGATGGCG TCGGTGGTGG CCGGCCTCGG CGCGGGCGCG
TTCGGCCTGT CGCAGGTCCC GGCGTCGGGC GATCTGTTCA GCACGGCGGC GCAGGCGCAG
GTCGGCAACG AGGTCCACAA GGCGCAGCAG CCCGTCGGCT TCGCCGACAT CGTCGAGAAG
GTGAAGCCCT CGGTGATCTC GGTGAAGGTC AACATCGCCG AAAAAGTTGC GAAGACCGAC
GAGCGCAGCG AGCGCAGCGA AGAATCGCCG TTCGCGCCCG GCTCGCCGAT GGAGCGCTTC
TTCCGCCGCT TCGGCGGTGA AATGCCGCCC GGCATGCGCG GCCATCGCGG CGGCGGCATG
ATGACGGGGC AGGGCTCGGG CTTCTTCATC ACCGCCGACG GCTACGCCGT CACCAACAAT
CACGTCGTCG ACGGCGCCGA CAAGGTCGAA GTCACCACCG ACGACGGCAA GACCTACAAG
GCCAAGGTGA TCGGCACCGA CCAGCGCACC GATCTGGCGC TGATCAAAGC CGAAGGCCGC
ACCGACTTCC CGTTCGCCAA GCTGTCCGAA GGCAAGCCGC GGATCGGCGA CTGGGTGCTC
GCGGTCGGCA ATCCGTTCGG CCTCGGCGGC ACCGTCACCG CCGGCATCGT CTCGGCCTCC
GGCCGCGACC TCGGCAACGG TCCGTATGAC GATTTCATCC AGATCGACGC GCCGGTGAAC
AAAGGCAATT CCGGCGGTCC GGCGTTCGAC GTCAATGGCG AAGTGATGGG TGTCAACACG
GCGATCTACT CGCCGTCGGG CGGCAGCGTC GGCATCGCGT TCTCGATCCC GGCCTCGACC
GTCAAGGCGG TGGTGCAGCA GCTCAAGGAC AAGGGCTCCG TCAGCCGTGG CTGGATCGGC
GTCCAGATCC AGCCGGTGAC GCCGGAGATC GCCGACAGCC TCGGGCTGAA GAAGCCGGAC
GGCGCGTTGG TGGCCGAGCC GCAGCCCAAC GGCCCGGCCG CCAAGGCCGG CATCGAATCC
GGCGACGTCA TCACCGCGGT CAACGGCGCG CCGGTGAAGG ACGCGCGCGA GCTCGCCCGC
ACCATCGGCG GCTTCGCGCC GGGCAATACG GTGAAGCTCA CCGTGTTCCA CAAGGGCGCG
GATCGGGAAC TCAGCCTGAC GCTCGGCCAA TTGCCGAACC AGGTCGAGGC CAAGGCCAAT
CTCGACGGCG ACAACGGTCG CCAATCCAGC CGCGGCACCG AAGTGCCGAG GCTCGGCCTG
ACGGTCGCGC CGGCCAGTTC GGTCGCCGGT GCCGGCAAGG ATGGCGTGGT GGTCACCGAC
GTCGATCCGA AGAGCGCCGC AGCCGATCGC GGCTTCAAGG AAGGCGACGT GATCCTCGAG
GTCGCGGGCA AGAACGTGGC GAGCCCGGGT GACGTCCGCG ACGCCATCAA CACCGCCAAG
AACGACAACA AGAACAGCGT GCTGATCCGG GTCCGCTCGG GTGGTTCGTC ACGTTTCGTC
GCGGTGCCGA TCTCGGCCAA GGGCTGA
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| Protein sequence | MTDRSSDLTS QPTSPVRRSL FSARKFALMA SVVAGLGAGA FGLSQVPASG DLFSTAAQAQ
VGNEVHKAQQ PVGFADIVEK VKPSVISVKV NIAEKVAKTD ERSERSEESP FAPGSPMERF
FRRFGGEMPP GMRGHRGGGM MTGQGSGFFI TADGYAVTNN HVVDGADKVE VTTDDGKTYK
AKVIGTDQRT DLALIKAEGR TDFPFAKLSE GKPRIGDWVL AVGNPFGLGG TVTAGIVSAS
GRDLGNGPYD DFIQIDAPVN KGNSGGPAFD VNGEVMGVNT AIYSPSGGSV GIAFSIPAST
VKAVVQQLKD KGSVSRGWIG VQIQPVTPEI ADSLGLKKPD GALVAEPQPN GPAAKAGIES
GDVITAVNGA PVKDARELAR TIGGFAPGNT VKLTVFHKGA DRELSLTLGQ LPNQVEAKAN
LDGDNGRQSS RGTEVPRLGL TVAPASSVAG AGKDGVVVTD VDPKSAAADR GFKEGDVILE
VAGKNVASPG DVRDAINTAK NDNKNSVLIR VRSGGSSRFV AVPISAKG
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