| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3433 |
|---|
| Symbol | |
|---|
| ID | 3911235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3931836 |
|---|
| End bp | 3932831 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637885336 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_487040 |
|---|
| Protein GI | 86750544 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.995497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0477625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA CGCGATTCAC CGAAACCTTC GGCATCGAGC ATCCGATCGT CCAGGGCGGG
ATGCAATGGG TCGGCCGTGC CGAACTGGTC GCGGCGGTCG CCAATGCCGG CGCGCTCGGC
ATGATCACCG CGCTGACGCA GCCGACGCCG GAAGACCTCA CCAAGGAAAT CGCGCGCTGC
CGTGAGCTCA CCGACAAGCC GTTCGGCGTG AACCTGACGA TCCTGCCGGC GATCAAGCCG
CCGCCTTATG CGGAATATCG CCAGGCGATC ATCGAGAGCG GCGTGCGGAT CGTCGAAACC
GCGGGCAACA AGCCGCAGGA GCACGTCGAG GAATTCAAGA AGCACGGCGT CAAGGTGCTG
CACAAATGCA CCAGCGTCCG CCACGCGCTC TCGGCCGAGC GGATGGGCGT CGACGGCATT
TCGATCGACG GCTTCGAATG CGCCGGCCAT CCGGGCGAGG ACGACACCCC CGGCCTGATC
CTGATCCCGG CCGCCGCCGA CAAGATCAAA ATTCCGATGA TCGCCTCCGG CGGCTTCGCC
GACGGCCGCG GCCTGGTGGC GGCGCTGTCG CTCGGCGCCG ACGGCATCAA CATGGGCACG
CGCTTCATGT GCACCAAGGA GAGCCCGATC CACGAAGCGG TGAAGCAGAA GATCGTCGAC
AATGACGAGC GCGCGACCGA CCTGATCTTC CGGACCTTGC GCAACACCTC GCGCGTCGCG
AAGAACGCGA TCAGCCAGCA GGTCCTCGAA CTGGAAAAGC AGGGCGCGAC CTTCGAGCAG
GTCAAGGACC TGGTTGCGGG CGCGCGCGGC AAGATGGTCT ATGTCACCGG CGACACCGAC
GAAGGCGTGT GGTCGGCCGG CCAGGTGCAG GGGCTGATCC ACGACATCCC GAGCTGCGCC
GACCTGGTGT CGCGGATCGT GCGCGACGCC GAGGCGATCA TTCGCGGCCG GCTCGAAACG
ATGCTATCGG GGGGCGCGCG TCAGGCTGCG GAATAG
|
|---|
| Protein sequence | MIKTRFTETF GIEHPIVQGG MQWVGRAELV AAVANAGALG MITALTQPTP EDLTKEIARC
RELTDKPFGV NLTILPAIKP PPYAEYRQAI IESGVRIVET AGNKPQEHVE EFKKHGVKVL
HKCTSVRHAL SAERMGVDGI SIDGFECAGH PGEDDTPGLI LIPAAADKIK IPMIASGGFA
DGRGLVAALS LGADGINMGT RFMCTKESPI HEAVKQKIVD NDERATDLIF RTLRNTSRVA
KNAISQQVLE LEKQGATFEQ VKDLVAGARG KMVYVTGDTD EGVWSAGQVQ GLIHDIPSCA
DLVSRIVRDA EAIIRGRLET MLSGGARQAA E
|
|---|
| |