| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3078 |
|---|
| Symbol | |
|---|
| ID | 3910879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 3509360 |
|---|
| End bp | 3510376 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637884983 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
|---|
| Protein accession | YP_486688 |
|---|
| Protein GI | 86750192 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.111325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTAGTC TCGTCGTCGA TTATCAAACG TCGTCCGGCG TCGTCCACGC GGTGAACGAC
GTCAGCCTGG AGATCGAGCC GGGTGAAACG GTGGGCCTCG TCGGGGAATC CGGCTGTGGC
AAATCCACGC TGGGCAAGGC CATCATGCAC CTGATCCCGG CCAACAACGG GCAGATCGTG
CTGGACGGCC AGAACATCAC CAGCCTGTCG CCGTCGGCGA TGCGTCCGAT CCGCTCGAAG
ATGCAGATGA TCTTCCAGGA TCCGCACAAT TCGCTCAATC CGCGGCGCAC GGTCGGCAAT
TTGATCGCGC AGCCGTTGCA GGTCGCGGGC TACGACAAGG CCGCCATCTC GGCGCGCGTC
GCCGAACTGA TGACTCAAGT CGGTCTGCCG CCGGATGCGG CATCTCGCTA TCCGCACGAG
TTTTCCGGCG GCCAGCGGCA GCGCATAGGC ATCGCCCGTG CGCTCGCGTT GAAGCCCAAG
CTGGTGATCT GCGATGAGCC GGTGTCGGCG CTCGACGTAT CGATCCGGGC GCAGGTGATC
AACCTGCTGC AGGATCTGTC GGACAAGCTC GGCGTGTCAT ACCTGTTCAT CTCGCACGAC
CTGACAATGG TCCAGCACAT CGCCAACAAG CTGATCGTGA TGTACCTCGG CCGGATCGTC
GAGACGGGCT CCGCCGAGAC GATCTGGAAG CACCCCGCAC ATCCATACAC CCAGGCGCTG
CTCGCCGCCG CGCCGGTGGC AGACCCGCAC GTCATGCGCA GCCGCAAGCG CTTCGTGCTG
CAGGGCGATC TGCCCAGCCC GACCGATCTT CCGGAAGGTT GCGCGTTCTC GACGCGTTGT
CCGTTCGCGA CGGATCACTG CCGGCAGGAG AGGCCGATCC TCCGGCCGCT CGGCGAAAAT
CGCAGGACGG CCTGTCACTA CGATCTCGTC GATCAGATCG AGAGCGCGGC GAGCGCGTCT
GTTTCGTCGC TCAGTCGGAA AGCCGAAGAG AAGTACAAGG TAGGAGCACG AGCATGA
|
|---|
| Protein sequence | MRSLVVDYQT SSGVVHAVND VSLEIEPGET VGLVGESGCG KSTLGKAIMH LIPANNGQIV
LDGQNITSLS PSAMRPIRSK MQMIFQDPHN SLNPRRTVGN LIAQPLQVAG YDKAAISARV
AELMTQVGLP PDAASRYPHE FSGGQRQRIG IARALALKPK LVICDEPVSA LDVSIRAQVI
NLLQDLSDKL GVSYLFISHD LTMVQHIANK LIVMYLGRIV ETGSAETIWK HPAHPYTQAL
LAAAPVADPH VMRSRKRFVL QGDLPSPTDL PEGCAFSTRC PFATDHCRQE RPILRPLGEN
RRTACHYDLV DQIESAASAS VSSLSRKAEE KYKVGARA
|
|---|
| |