Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3031 |
Symbol | |
ID | 3910830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 3454509 |
End bp | 3455213 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637884937 |
Product | ThiJ/PfpI |
Protein accession | YP_486644 |
Protein GI | 86750148 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.140928 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCCAGT TGCAGATCGG ACTATTGCTG TTTCCCAACC TCACCCAGCT CGACCTCACC GGGCCGCTGC AGGTGCTCTC GCGCATTCCC GGCGCGACCG TGCATCTGAT CAGCAAGACG ATGGCGCCGG TGCCGAGCGA CGCGGTGCTG TTGCTGCCGC CGACGATCAC CTTCGCGGAC TGCCCGCAGC TCGACGTGAT CTGCGTCCCC GGCGGATACG GCACCGACGA CCTCGTGGGC GACGACGACA CGCTGGACTT CCTGCGCCGG CAGGCGGAAG GCGCGCGCTA TGTGACCTCG GTGTGCACCG GTTCGCTGGT GCTCGGCGCG GCGGGACTGC TGCGCGGCTA TCGCGCCACG ACGCATTGGT CGGCGATCGA CGACCTTGCG GCGTTCGGCG CCATCCCCGA CCGCAGCCGC GTCTGCATCG ACCGCAACCG CATCACCGGC GGCGGCGTCA CCGCCGGCAT CGATTTCGCG CTGACGCTGG TCGAACTGCT GGCCGATCGC ACAACCGCGC AGGCGATCCA ACTGACGCTG GAGTACAACC CGGCGCCGCC GTTCAATGCC GGCTCGCCCG AGACCGCGCC GGAGCCGGTG GTAGCGATGC TGAAAGAGCG GCTGCAGGGT GCGCGGCAGC GCCGCAGCGA GTCGGTCGCG CGCGCCGCGG CGCGGTTGCA GGCCGAAACA GAAACGGCGG CCTGA
|
Protein sequence | MAQLQIGLLL FPNLTQLDLT GPLQVLSRIP GATVHLISKT MAPVPSDAVL LLPPTITFAD CPQLDVICVP GGYGTDDLVG DDDTLDFLRR QAEGARYVTS VCTGSLVLGA AGLLRGYRAT THWSAIDDLA AFGAIPDRSR VCIDRNRITG GGVTAGIDFA LTLVELLADR TTAQAIQLTL EYNPAPPFNA GSPETAPEPV VAMLKERLQG ARQRRSESVA RAAARLQAET ETAA
|
| |