| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3007 |
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| Symbol | |
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| ID | 3910806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 3425035 |
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| End bp | 3427527 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637884913 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_486620 |
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| Protein GI | 86750124 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.160235 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTTGC TGCTGCGGTT TTTCGGCTTT CTGTTCGCAG CCGGGACCAT CGTGTTCCTG
GTCGGCGTGG CCGCTGCGGC CGGGATGATC TGGCATTTTT CCAAGGACTT GCCCGACTAC
TCTCAGCTCC AGGATTACGA ACCGCCGGTG ATGACGCGCG TCCATGCGAC GGACGGCTCG
CTGCTCGGCG AATATTCGAA AGAGCGACGG CTGTATCTGC CGATCCAGGC CGTGCCGAAG
CTGGTGATCA ACGCCTTCCT CGCCGCCGAA GACAAGAATT TCTACGAGCA CGGCGGCATC
GACTATCAGG GCATGGCGCG CGCCGCGATC CTGTACGCGC AGAACATCGG GTCCAACCGG
CGGCCGCAGG GTGCGTCGAC GATCACCCAG CAGGTCGCCA AGAACTTCCT GCTCACCAAC
GAAGTGTCGT TCACCCGTAA GATCAAGGAA GCCTTGCTGG CGATGCGGAT CGAGCGGGCC
TATTCGAAGG ACCGCATCCT CGAACTGTAT CTCAACGAGA TCTATCTGGG ACTCGGCGCT
TACGGCGTCG CCGCCGCCTC ACTGGTGTAT TTCGACAAAT CGGTCAACGA ACTGACCCTG
TCGGAAGCGG CCTATCTGGC GGCGCTGCCG AAGGCCCCCG CGGCGCTGCA CCCGATCCGC
AACCACGATC GCGCGGTCGA GCGCCGCAAC TACGTCATCG ACCGCCTGGT CGAAAACGGC
TGGACCAAGC AGGCCGACGC CGACAAGGCG CGCAAGGAGC CGCTGACCGT CACCAGCCGC
GGCACCGGCG CGCACACGTT CGCCGGCGAG TATTTCGCCG AGGAGGTCCG CCGCGATATC
CTCGAGCGCT ACGGCGAAAA GAAGCTCTAC GAAGGCGGCC TGTCGGTCCG CACCTCGCTC
GATCCGAAGC TGCAGGTCGA GGCGCGCAAG ACGATGACCG CGGGCCTCGT CAAATTCGAC
GAGGCGCAGG GCTGGCGCGG GCCGGTCTCG AAGCTGGATA TCAGCGGCGA CTGGGGTGTG
AAGCTGGCCG ACGTCAAATC GCTGTCCGAC ATCTCGCCGT GGCGCATGGC TGTGGTGCTC
GAGACCTCCG ACCAGTCGGC GCGGATCGGC TTCCAGCCCG GCCGCGAACT CGGCGGCGCG
GTGTCGAAGA AGCGCGAGAC CGGATTGATC GCTCTCGACG GCGTGAAATG GGCGAAAGCC
GCGGCGGGTC CGCAGCGCGG CCGGACGCCG GGCTCGGTGT CGCAGGTGTT GGCGGCCGGC
GACGTCATCT ATGCGGATTC GCTGCTCGAC AAGGAAGGCA AGCCCGTCGA GGGCCAGTAC
CGGCTGCGAC AGATCCCCGA AGTGTCGGGC GCGATGGTGG CGATGGATCC CTGGACCGGC
CGCGTGGTGG CGATGGTCGG CGGCTTCTCG TTCGACCAGA GCCAGTTCAA CCGCGCCACA
CAGGCCTATC GCCAGCCCGG CTCGTCGTTC AAGCCGCTGG TGTATTCGGC GGCGATGGAC
AACGGCTATA CGCCGTCCAC CGTGGTGATC GACGCGCCGA TCGAAATCGA TCAGGGGCAG
GGCGCCGGCG TGTGGCGACC GGAGAACTAT TCGACCGGCA AATATTACGG ACCGGTCACG
CTGCGCAACG CGCTGCAGCG CTCGCTCAAC ACCGTGACGG TGCGGCTGGC GCAGGACGTC
GGCATGCCGC TGATCGGCGA ATACGCCAAG CGCTTCGGCG TCTATGACGA ATTGCCGAAC
TATCTGTCCT ATGCGCTCGG CGCCGGCGAG ACCACGGTGA TGCGGATGGT CACCGCCTAT
TCGATGTTCG CCAATGGCGG ACGGCGGGTG AAGGCGACGC TGATCGACCG CATTCAGGAT
CGCTACGGCC GCACCATCTT CAAGCACGAC GCCCGCGAAT GCCGCGGCTG CGATGCGCCG
GAGGGTTGGA AGAACCAGCC CGAGCCGCAG CTCGTCGACC GTCGCGAGCA GGTGCTCGAT
CCGATGACCG CCTACCAGAT CACGTCGATG ATGGAGGGCG TGGTGCAGGC CGGCACCGCG
ACGGTGGTGC GCGAGGTCGG CAAGCCGATC GCCGGCAAGA CCGGCACCAC CAATGACGAG
AAGGATGCCT GGTTCATCGG GTTCTCGCCG GACCTCGTGG TCGGGATCTA TTTCGGCTAC
GACAAGCCGC GCAATCTCGG CCGCGGCGCC ACCGGCGGCC ATCTCGCCGC CCCCGTCGCC
AAGGATTTCT TCAAGCTCGC GCTCGCCGAC AAGCCGGCGG TGCCGTTCCG CGTGCCGGCG
GGAATCAAGC TGGTCCGCGT CGACGCCAAG AGCGGGATGC GCGCCGGCCC GGGCGACGGC
GGCCGCACCA TCCTCGAGGC GTTCAAGCCG GGCACCGCGC CGCCCGACAA TTATTCGGTG
ATCGGCGTCG CCGATGCCGA TGGCCGCCAG CAGCAGGCGC CGCCGCCGGA CGATCGCGGA
TTTTTCCGCC CCGGCACCGG CGGACTGTAC TGA
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| Protein sequence | MRLLLRFFGF LFAAGTIVFL VGVAAAAGMI WHFSKDLPDY SQLQDYEPPV MTRVHATDGS
LLGEYSKERR LYLPIQAVPK LVINAFLAAE DKNFYEHGGI DYQGMARAAI LYAQNIGSNR
RPQGASTITQ QVAKNFLLTN EVSFTRKIKE ALLAMRIERA YSKDRILELY LNEIYLGLGA
YGVAAASLVY FDKSVNELTL SEAAYLAALP KAPAALHPIR NHDRAVERRN YVIDRLVENG
WTKQADADKA RKEPLTVTSR GTGAHTFAGE YFAEEVRRDI LERYGEKKLY EGGLSVRTSL
DPKLQVEARK TMTAGLVKFD EAQGWRGPVS KLDISGDWGV KLADVKSLSD ISPWRMAVVL
ETSDQSARIG FQPGRELGGA VSKKRETGLI ALDGVKWAKA AAGPQRGRTP GSVSQVLAAG
DVIYADSLLD KEGKPVEGQY RLRQIPEVSG AMVAMDPWTG RVVAMVGGFS FDQSQFNRAT
QAYRQPGSSF KPLVYSAAMD NGYTPSTVVI DAPIEIDQGQ GAGVWRPENY STGKYYGPVT
LRNALQRSLN TVTVRLAQDV GMPLIGEYAK RFGVYDELPN YLSYALGAGE TTVMRMVTAY
SMFANGGRRV KATLIDRIQD RYGRTIFKHD ARECRGCDAP EGWKNQPEPQ LVDRREQVLD
PMTAYQITSM MEGVVQAGTA TVVREVGKPI AGKTGTTNDE KDAWFIGFSP DLVVGIYFGY
DKPRNLGRGA TGGHLAAPVA KDFFKLALAD KPAVPFRVPA GIKLVRVDAK SGMRAGPGDG
GRTILEAFKP GTAPPDNYSV IGVADADGRQ QQAPPPDDRG FFRPGTGGLY
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