Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_2894 |
Symbol | |
ID | 3910688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 3295455 |
End bp | 3296837 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637884795 |
Product | Type I secretion outer membrane protein, TolC |
Protein accession | YP_486507 |
Protein GI | 86750011 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.386257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGCGGT TATCCGGTCT TATGACTGCC GGCGTCGTTC TGGCGTGTTT GGGTCCGGCC CCTGTGCTGG CCGAAACGAT CGAGGCTGCC TTGATCCGCG CCTACCAGAC CAACCCCCAG CTCAATGCCC AACGCGCCTC GGTGCGCTCG ACCGACGAAT CGGTTCCGCA GGCGCTGTCG GGCTATCGTC CCAAGGTTTC GGTGACGGCG AGCGGCGGCT ATCAATACAC CGACGTCGCC GGCGTCCAAC TCGGCAACCG GTATCAGCTC AACGGCACGC AGGTTCCGCG GTCGGTCGGC ATCACCGCGA CGCAGACGCT GTTCAACGGC AACCAGACCG CCAACCGCAC TCGCGCGGCC GAGGGCCAGG TCTCATCGGC GCGCGAGGGA CTTCGCGTGC TGGAACAATC CGTGCTGCTG TCGGCCGCGA CCATCTACAT GGACTATCTG CGCGACGCGG CGACGGTCGA GGTGCAGAAG TCCAACGTCC GCGTGCTCGA CCAGACGCTG AAGCAGACCA ACGACCGCTT CAATGTCGGC GAGGTCACCC GTACCGACGT CGCGCAATCG CAGGCGCAGC TTGCGGCCGG TAACACCCAG TTGCTCACCG CCGAATCCAA TCTCACGACC ACCCGCGCGA ATTACCGCCG GATCATCGGC AGCGAGCCGA CCGGGCTGGC GCCGGGATCG CCCGTCGATC GCTTCCTGCC GGCAACGCTG GCGAAGGCGG TCGAACTCGG CATGGTCGAG AATCCGAACG TCACCTCGGC GATGTACGGG GTCGACGTCA ATTATCTCAA CGTGAAGATC AACGAAGGCG CGCTGTTCCC GACCGTCACT CTGCAGGCGA ACGCGCAGCA ATCATGGGAA TCGTCGATCA CGACGAGCAA GCAGTTCGTC GCCGGGGCGA CCGCCCAAGT GTCGATTCCG ATCTATCAGG GTGGCTCCGA ATATTCGCTG ATCAGGCAAT CGAAGGAATC GCTGGCGCAG CAGCGTCTCT ATCTCGAGCA GGTGCGCGAC CAGACCCGCG CGACCATCGT GCAGGCCTGG GGCCAGCTCG AAGCGGGCCG GGCCCAGGTC GCCTCGGCAC AGTCCCAGGT CAAGGCATCG GAGATCGCGC TTAACGGCGT GCGCGAAGAG GCGCGGGCCG GCCAGCGCAC CACGCTCGAC GTCCTCAACG CGCAGCAGGC GCTGGTCAAT GCGCGGGTGT CGCTGGTGAC GGCGCAGCAT GATCGCGTGG TGGCGTCGTA TTCGGTGCTG AGTGCGATCG GGCGGCTGGC GCCGCAGGTG CTCGGCCTGA AGACCGATGT CTACGATCCG AGTGTGCACT ACCATCAGGT CCGCGATTCC TGGGTCGGCG TTCGGACGCC CGACGGTCGC TGA
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Protein sequence | MKRLSGLMTA GVVLACLGPA PVLAETIEAA LIRAYQTNPQ LNAQRASVRS TDESVPQALS GYRPKVSVTA SGGYQYTDVA GVQLGNRYQL NGTQVPRSVG ITATQTLFNG NQTANRTRAA EGQVSSAREG LRVLEQSVLL SAATIYMDYL RDAATVEVQK SNVRVLDQTL KQTNDRFNVG EVTRTDVAQS QAQLAAGNTQ LLTAESNLTT TRANYRRIIG SEPTGLAPGS PVDRFLPATL AKAVELGMVE NPNVTSAMYG VDVNYLNVKI NEGALFPTVT LQANAQQSWE SSITTSKQFV AGATAQVSIP IYQGGSEYSL IRQSKESLAQ QRLYLEQVRD QTRATIVQAW GQLEAGRAQV ASAQSQVKAS EIALNGVREE ARAGQRTTLD VLNAQQALVN ARVSLVTAQH DRVVASYSVL SAIGRLAPQV LGLKTDVYDP SVHYHQVRDS WVGVRTPDGR
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