| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2617 |
|---|
| Symbol | |
|---|
| ID | 3910409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2999539 |
|---|
| End bp | 3000162 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637884516 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_486230 |
|---|
| Protein GI | 86749734 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3226] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.923721 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAG GTGAGGCGGC TGTCAACAGC ATGGACAGGA TCGATTTCGA AGCGAGTGAC
CGCGAGCGCC CAGTGATGGA GGCTACATTG CGCCTCATCG GGCGCGGTGG GCTCAAGGGC
GTCACCCACA GGGCGGTCGC GGCTGAAACC GGCCTGTCGC TCGGCGCGAT CACCCATCAT
TTCGGCACGC GCGATCTGCT GGTCGAGGCC GCGCTGAAAT TCGCCCTGAT GCGCGAGGTC
AGGCGTCTGC GCGCGCTGGC GCTGAGCCTG CAGAGCGACG CGCTCGACGT GGAAGCGTGG
ATCGACGCGC TGGTCGGCTG GTACACCAAA GAACTCGACT CCGACGCCGA GATTCATATC
GCCTGTTACG AGGCGTTCCT GGCGGCGGCG CGCGACGATC GCTACCGGCC TATCGTCGCC
GAATGGTACG AGACCTGGCG GCGCAGCGCC GAGCTCGCGC TGACCGCGGC GGGCTCGAGC
AGGCCGCAGC TGCATGCGGA GATCTTCGTC TCGGCGCTGG TGGGGATCGT GCTGCAGCAG
CTCGCGGCTC CACGCCGGAA ATTCCGGGCG GAGACGCGGG CTGCCTTGTC CGAATTGATG
CGTGGCCTGA TCGGAAGAAC CTAG
|
|---|
| Protein sequence | MIEGEAAVNS MDRIDFEASD RERPVMEATL RLIGRGGLKG VTHRAVAAET GLSLGAITHH
FGTRDLLVEA ALKFALMREV RRLRALALSL QSDALDVEAW IDALVGWYTK ELDSDAEIHI
ACYEAFLAAA RDDRYRPIVA EWYETWRRSA ELALTAAGSS RPQLHAEIFV SALVGIVLQQ
LAAPRRKFRA ETRAALSELM RGLIGRT
|
|---|
| |