| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2113 |
|---|
| Symbol | |
|---|
| ID | 3908527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2403343 |
|---|
| End bp | 2404626 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637884006 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_485730 |
|---|
| Protein GI | 86749234 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.473002 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.06428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCGA CCTGGCTGTC CGCCGCCCTG GCCCGCCGCG ACATTCATTA CGGCTGGGTG
ATGGTCGGCG TGACCTTCCT CACGGCGCTG GTCTCGGCCG GCGCGGTCGG CGCGCCGGGC
GTTTTCATTC TGCCGCTGCA GCAGGAATTC GGCTGGACCA CCGCCGAGAT TTCCTCGGCG
CTGTCGATCC GTTTCATCCT GTTCGGGCTG ATGGCGCCGT TCGCGGCGGC GCTGATGAAC
CGCTACGGCC TGCGCAATGT CGCGCTCGCC GGACAAGTGA TCATCGCCGC GAGCCTGATC
GGCTCGGTGG CGATGAGCCA GGTCTGGCAG CTGGTGCTGC TGTGGGGCGT CGCGGTCGGG
ATCGGCACCG GCCTGACGGC ACTGGTGCTC GGCGCCACCG TGGCGGCACG CTGGTTCAAT
CATCGCCGCG GCCTCGTCGT CGGCATCCTC ACCGCCAGCG TCGCCACCGG GCAATTGGTG
TTCCTGCCGA TGCTGGCGAG CCTCACCGAA CGTTACGGAT GGCGCGTCGC GCTGCTGCTG
CTGTGCGGCG GCCTCGGCGT CGCCGCGATG GGCGTGCTGC TGATGATGCG CGACCGGCCG
GGCGATCTCG GGCTGCGGCC GTTCGGCGAT ACCGGGAGCG AGCCGCTGCC GCCGCCGCCG
CCCGCCAATG CCCCGATCAT GGCGGCGGCG CTGGGCGCGC TGCGCGACGC CGCGAAGACC
CGGGTGTTCT GGATCCTGTT CGCGACGTTC TTCATCTGCG GCGCATCGAC CAACGGCCTG
ATCCAGGTGC ACCTGATTCC GCTATGTGCC GATTTCGGCA TCCCGCAGGT GCAGGCGGCC
GGGCTGCTCG CGGCGATGGG AATCTTCGAT TTCGTCGGCA CCATCCTGTC GGGCTGGCTG
TCGGACCGCT ACGACAATCG CTGGCTGCTG TTCTGGTATT ACGGCCTGCG CGGGCTGTCG
TTGCTGTTCC TGCCGTTCAG CGATTTCACC TTCTACGGGC TGTCGCTGTT CGCGCTGTTC
TACGGGCTCG ACTGGATCGC CACGGTGCCG CCGACGGTGC GGCTCACCGC GCAGAAATTC
GGCCCGGAGC GCGCCGGGAT CGTGTTCGGC TGGATCTTCG CCGGCCATCA GCTCGGCGCC
GCCACCGCGG CGTTCGGCGC CGGACTGTCC CGCACCGTCC TGCTCAGCTA CCTGCCGGCG
TTCTTCGTCG CCGGCGCGCT GTGCATCGTC GCGGCGCTGA TCGTGCTGAC GATCAGCAAG
CACCCGCGGC CGGCGGCGGC CTGA
|
|---|
| Protein sequence | MISTWLSAAL ARRDIHYGWV MVGVTFLTAL VSAGAVGAPG VFILPLQQEF GWTTAEISSA
LSIRFILFGL MAPFAAALMN RYGLRNVALA GQVIIAASLI GSVAMSQVWQ LVLLWGVAVG
IGTGLTALVL GATVAARWFN HRRGLVVGIL TASVATGQLV FLPMLASLTE RYGWRVALLL
LCGGLGVAAM GVLLMMRDRP GDLGLRPFGD TGSEPLPPPP PANAPIMAAA LGALRDAAKT
RVFWILFATF FICGASTNGL IQVHLIPLCA DFGIPQVQAA GLLAAMGIFD FVGTILSGWL
SDRYDNRWLL FWYYGLRGLS LLFLPFSDFT FYGLSLFALF YGLDWIATVP PTVRLTAQKF
GPERAGIVFG WIFAGHQLGA ATAAFGAGLS RTVLLSYLPA FFVAGALCIV AALIVLTISK
HPRPAAA
|
|---|
| |