| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2041 |
|---|
| Symbol | |
|---|
| ID | 3909856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2320339 |
|---|
| End bp | 2321835 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883934 |
|---|
| Product | peptidase S1C, Do |
|---|
| Protein accession | YP_485659 |
|---|
| Protein GI | 86749163 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTTG CGATCACCGC CTTGAGCTTC CGGTTCAAGC CTCTGCTGAC GGCTTTGTGC
CTCGGCGCGG CTGCCGCCTT GACCGCGGCG CCGGCGCAGG CCCGCGGCCC CGAGGGCATC
GCGGACGTCG CCGAGAAGGT CATCGACGCC GTGGTCAACA TCTCGACCAG CCAGACCGTC
GAGGCCAAGA GTGCGCCCAG CGAGGGCAAC AGCGCCAAGC CGAATCTGCC GCCGGGGTCG
CCCTTCGAGG AGTTTTTCGA GGACTTCTTC AAGAACCGCC GCGGCGAGAA GGGCGGTGGC
GGCCCGCGCA AGACCAACTC GCTCGGCTCG GGCTTCATCG TCGACACCGC CGGCATTGCC
GTGACCAACA ATCACGTCAT CGCCGACGCC GACGAGATCA ACCTGATCAT GAACGACGGC
ACCAAAATCA AGGCGGAGCT GGTCGGCGTC GACAAGAAGA CCGATCTGGC GGTGCTGAAG
TTCAAGCCGC CGGCGAACAA GCCGCTGGTG GCGGTGAAGT TCGGCGACAG TGACAAGCTG
CGGCTCGGCG AATGGGTGGT GGCGATCGGC AACCCGTTCT CGCTCGGCGG CACGGTCACC
GCCGGCATCG TCTCGGCGCG CAACCGCGAC ATCAATTCGG GGCCGTATGA CAGCTACATC
CAGACCGACG CCGCGATCAA TCGCGGCAAT TCCGGCGGCC CGCTGTTCAA CCTCGACGGC
GAAGTCATCG GCGTCAACAC GCTGATCATC TCGCCGTCCG GCGGCTCGAT CGGCATCGGA
TTCGCGGTGC CTTCGAAGAC CGTGGTCGGG GTGGTCGATC AGCTCCGCCA GTTCGGCGAG
CTGCGCCGCG GCTGGCTCGG CGTGCGGATC CAGCAGGTCA CCGACGAGAT CGCCGAAAGC
CTCAACATCA AGCCGGCGCG CGGCGCGCTG GTCGCCGGCA TCGACGACAA GGGCCCGGCC
AAGCCCGCCG GCATCGAGCC CGGCGACGTC GTCGTCAAGT TCGACGGCAA GGACGTCAAG
GAGCCGAAGG ATCTGTCGCG CGTGGTCGCC GACACGGCGG TCGGCAAGAC CGTCGACGTG
GTGATCATCC GCAAGGGCAA GGAAGAGACC AAGCAGGTCA CGCTCGGCCG CCTCGACGAC
GGCGCCAAGC CGCAGCCGGC CTCCGCGAAG TCGCAGCCGG AGCCGGAAAA GCCGGTGACA
CAGAAGGCGC TCGGGCTCGA CCTCGCCGCG CTGTCGAAGG ACCTGCGCGG CAAGTACAAG
ATCAAGGACA GCGTCAAGGG CGTCGTCGTG GTCGGCGTCG ACACCGGCTC CGATGCCGCC
GAGAAGCGGC TGTCGGCCGG CGACGTGATC GTCGAAGTGG CGCAGGAAGC GGTCACCAGC
GCCGCCGATA TCAAGAAGCG GATCGATCAG GTCAAGAAGG ACGGCAAGAA GTCGGTGCTG
CTGCTGGTTT CGAACGGAGC CGGCGAACTG CGCTTCGTGG CGCTCAGCCT GCAATAG
|
|---|
| Protein sequence | MPVAITALSF RFKPLLTALC LGAAAALTAA PAQARGPEGI ADVAEKVIDA VVNISTSQTV
EAKSAPSEGN SAKPNLPPGS PFEEFFEDFF KNRRGEKGGG GPRKTNSLGS GFIVDTAGIA
VTNNHVIADA DEINLIMNDG TKIKAELVGV DKKTDLAVLK FKPPANKPLV AVKFGDSDKL
RLGEWVVAIG NPFSLGGTVT AGIVSARNRD INSGPYDSYI QTDAAINRGN SGGPLFNLDG
EVIGVNTLII SPSGGSIGIG FAVPSKTVVG VVDQLRQFGE LRRGWLGVRI QQVTDEIAES
LNIKPARGAL VAGIDDKGPA KPAGIEPGDV VVKFDGKDVK EPKDLSRVVA DTAVGKTVDV
VIIRKGKEET KQVTLGRLDD GAKPQPASAK SQPEPEKPVT QKALGLDLAA LSKDLRGKYK
IKDSVKGVVV VGVDTGSDAA EKRLSAGDVI VEVAQEAVTS AADIKKRIDQ VKKDGKKSVL
LLVSNGAGEL RFVALSLQ
|
|---|
| |