Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1992 |
Symbol | murD |
ID | 3909498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 2263174 |
End bp | 2264574 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637883886 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_485611 |
Protein GI | 86749115 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00736654 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCCG TCACCTCTTT CGCCGGGCAA TCCGTCGCGG TGTTCGGGCT CGGCGGCTCG GGGCTGGCGA GCTGCCACGC GCTGCGCGCC GGCGGCGCCG AAGTGATCGC CTGCGACGAC AATCTCGACC GCATGGTCGA AGCGGCGCAG GCCAATTTCA TCACCGCCGA TCTGCGCAAT CTGCCGTGGA TGAATTTTGC CGCGCTGGTG CTCACGCCGG GCGTGCCGCT GACGCATCCG ACGCCGCATT GGAGCGTGCT CAAGGCGCGC GAGGCGGGCG TCGAGGTGAT CGGTGACGTC GAGCTGTTCT GCCGCGAGCG GCGGCTGCAC GCGCCGAACG CGCCGTTCGT CGCCATCACC GGCACCAACG GCAAGTCCAC CACCACGGCG CTGATCGCGC ATCTGATGCG GCAGGCCGGC TACGACACCC AGATGGGCGG CAATATCGGC ACCGCGATCC TGTCGCTGGA GCCGCCGCGC GCCGGCCGCG TCCACGTGAT CGAGATGTCG TCCTACCAGA TCGATCTGAC ACCGTCGCTC GATCCGAGCG TCGGCATCCT GCTCAATGTC ACCGAGGACC ACATCGATCG CCACGGCACC ATCGAGCACT ATGCCGCGGT GAAGGAGCGG CTGGTTGCCG GCGTGCAGGA CGGCGGCACC GCGATCATCG GCGTCGACGA CGGCTTCGGC CGCGACGCCG CCGACCGGCT GGAGCGCGCC GGCAAGCGCG TGGTGCGGAT TTCGGTGAAG CAGCCGCTCG CCTCGGGCAT CACCGCGGAT CGCGAGACGA TCGTGCAAGC CGACGGCGGC GCATCGCATG AAGTCGCGAA GCTCGACGGC ATCGGTTCGC TGCGCGGTTT GCACAACGCG CAGAACGCCG CGGCGGCCGC CGCCGCAGCG CTGGCGCTCG GCGTCGGCCC GGACGTGCTG CAGAACGGCC TGCGCAGCTT CCCGGGCCTC GCGCACCGGA TGGAGCAGGT CGGACGCCAA GGCACGACGC TGTTCGTCAA CGACTCCAAG GGCACCAATG CCGACGCGAC CGCGAAAGCG CTGTCGTCGT TCGGCGAGAT CTTCTGGATC GCCGGCGGCA AGCCGAAGAC CGGCGGCATC GACAGCCTCG CCGAATACTT CCCGCGCATC CGCAAGGCCT ATCTGATCGG CGAGGCGGCG CAGGAATTCG CCGCGACGCT GGAAGGGCGT GTGCCCTACG AGATCAGCGT GACGCTGGAC AACGCGGTGC CGGCCGCCGC ACGCGACGCC GCATCGTCGG GGCTGCCGGA GCCGGTCGTG CTGCTGTCGC CGGCCTGCGC CTCGTTCGAC CAGTTCAGGA ATTTCGAAAT CCGCGGGACG AAGTTCCGCG ATCTGGTGAC GGCGCTGGAT GGGGTGAAGC CGGTGGCCTA G
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Protein sequence | MIPVTSFAGQ SVAVFGLGGS GLASCHALRA GGAEVIACDD NLDRMVEAAQ ANFITADLRN LPWMNFAALV LTPGVPLTHP TPHWSVLKAR EAGVEVIGDV ELFCRERRLH APNAPFVAIT GTNGKSTTTA LIAHLMRQAG YDTQMGGNIG TAILSLEPPR AGRVHVIEMS SYQIDLTPSL DPSVGILLNV TEDHIDRHGT IEHYAAVKER LVAGVQDGGT AIIGVDDGFG RDAADRLERA GKRVVRISVK QPLASGITAD RETIVQADGG ASHEVAKLDG IGSLRGLHNA QNAAAAAAAA LALGVGPDVL QNGLRSFPGL AHRMEQVGRQ GTTLFVNDSK GTNADATAKA LSSFGEIFWI AGGKPKTGGI DSLAEYFPRI RKAYLIGEAA QEFAATLEGR VPYEISVTLD NAVPAAARDA ASSGLPEPVV LLSPACASFD QFRNFEIRGT KFRDLVTALD GVKPVA
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