| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1985 |
|---|
| Symbol | |
|---|
| ID | 3909491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2254367 |
|---|
| End bp | 2255233 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883879 |
|---|
| Product | negative regulator of AmpC, AmpD |
|---|
| Protein accession | YP_485604 |
|---|
| Protein GI | 86749108 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.116261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCAG GTTCGTTCGC GTCTGCAGGC TCAGAGTCGA AGCGTCGACG TGCCGTCCCA
CTGCCCAAGG GCATCGTGGC CATGCAGACT TTTACACCCG ATTCATCCGT CGTTTCCGAC
GTGATCCCGT CGCCGAATTT CGGCGAGCGC AACAAGGCGC GCCAGCCCGA CATGATCGTG
CTGCACTACA CCGGCATGCC CGACGTCGAG GGCGCCCTGA CCCGGCTGTG CAAGGCCGGC
ACCGAAGTGT CGGCGCATTA CGTCGTGCTC GAGGACGGCC GGATCCTGCA ATGCGTGCCG
GAATCGAAGC GCGCCTGGCA CGCCGGCGTG GCGCATTGGG CCGGCGAGGA CGATATCAAT
TCCTGCTCGA TCGGCATCGA GATCATCAAT CGCGGCCATG ATTGGGGCTA TCCGGACTAT
CCGCTTCGCC AGATCGCCGC GGTGATCGCG CTGTGCCGCG GAATCATCAT CCGCCGCAAC
GTTCAGCCGC ATCGCGTGCT CGGCCATTCC GACGTGGCCC CCGCGCGCAA GAAGGACCCC
GGCGAGAAAT TTCCGTGGCG GGCGCTGGCC TCCTCCGGCG TCGGGCATTG GGTCGAGCCG
GCGCCGATCG ATGCCGGCGC GGTGCTGCGC CATGGCGCCG AGGGCGAACC GGTCCAGGTG
CTGCAGCGCG CGCTGGCCGA TTACGGCTAC GGCATCGCGA TCAACGGCAA GTTCGACCAC
GCGACCTTCG AGGTCGTCAC CGCCTTCCAG CGCCATTTCC GGCCCGAGAA GGTCGACGGC
ATCGCCGACG GCTCGACGCT GGCAACGCTG CACGCGCTGC TCGGCGGTCT GCCGGTCGAG
GTCCGCACCG CCGCTGCGCT GGGCTGA
|
|---|
| Protein sequence | MLSGSFASAG SESKRRRAVP LPKGIVAMQT FTPDSSVVSD VIPSPNFGER NKARQPDMIV
LHYTGMPDVE GALTRLCKAG TEVSAHYVVL EDGRILQCVP ESKRAWHAGV AHWAGEDDIN
SCSIGIEIIN RGHDWGYPDY PLRQIAAVIA LCRGIIIRRN VQPHRVLGHS DVAPARKKDP
GEKFPWRALA SSGVGHWVEP APIDAGAVLR HGAEGEPVQV LQRALADYGY GIAINGKFDH
ATFEVVTAFQ RHFRPEKVDG IADGSTLATL HALLGGLPVE VRTAAALG
|
|---|
| |