| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1941 |
|---|
| Symbol | |
|---|
| ID | 3908020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2210212 |
|---|
| End bp | 2210976 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883835 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_485560 |
|---|
| Protein GI | 86749064 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGC TTGGCTACGG TTTCGCCGTC CTCGTCGTCG CCTGCGGGCT CGGCAGCTCG
ATGGCGCTCG CGGCCGACAT GGCCATGAAG GCGCCCGTGA AGGCGGTGCC CTACGCGCCC
TCCCCCAGCT GGACCGGCCT CTATGTCGGC GGCCATCTCG GCGGCGGCTG GGTCGACGAG
ACCGCCACCT TCGTCAGCAG CACGTCGATC AATCTGATCG ATCCGCTCGG CACCTCGTAC
CCGATCGATC ACAGCGGCTT CCTCGGCGGC GTGCAGGCCG GCTACAATTA CCAGATCCAG
AACTGGGTGA TCGGCATCGC CGGCGATTTC TCCTGGACCA GCGCCAAGGT CGATACCGTC
ACCGCCAGCC TTCTCGTTCC CGGCGCGCAG GTTCACACCC AGGCCAAGAC CGACTGGTAC
GCGACCGCGA CCGGCCGGGT CGGCTATGCC TTCGGCAATT TGCTGGCCTA CGGCAAGGGC
GGCGCCGCCT GGATTCACAG TGTCCATGGC GGCTTCGCCG ATTTCGGCGC CGCCGGCATC
GTCCCATTCA GCGACGTCAC CACCACCCGC GCCGGCTGGA CGGTCGGCGT CGGTCTCGAA
TGGGCGTTCG CGCCGCATTG GTCGGTGTTC GGCGAATACA ACTACATGGA TTTCGGCACC
AGGACCTATA CCTTCACCAA TCTGGCGGAC GGCGGCAGCA CGTCGAATTT CGACGTCAAG
ACCAGCGTGA GCCTGGTGAA GGCCGGCGTG AACTATCGGT TCTGA
|
|---|
| Protein sequence | MAQLGYGFAV LVVACGLGSS MALAADMAMK APVKAVPYAP SPSWTGLYVG GHLGGGWVDE
TATFVSSTSI NLIDPLGTSY PIDHSGFLGG VQAGYNYQIQ NWVIGIAGDF SWTSAKVDTV
TASLLVPGAQ VHTQAKTDWY ATATGRVGYA FGNLLAYGKG GAAWIHSVHG GFADFGAAGI
VPFSDVTTTR AGWTVGVGLE WAFAPHWSVF GEYNYMDFGT RTYTFTNLAD GGSTSNFDVK
TSVSLVKAGV NYRF
|
|---|
| |